PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00980.1
Common NameZOSMA_28G00980
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family BBR-BPC
Protein Properties Length: 277aa    MW: 30862.8 Da    PI: 9.398
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00980.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2418.1e-7481276109301
        GAGA_bind 109 dslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrq..rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl 198
                      ++ +++s+  p ++++ +++++++ ++ + + +  +++++ k + +    r +  k++++kk+kkk++ + +++ +++   r  + kk++++v+
  Zosma28g00980.1  81 HQEEKISHpfPFIHPTYTPISDTRLIHYPHLPDPSSTIDKPKPSPSLLpgRRRGFKSSNSKKPKKKPHLEGEESGNNN--GRCGRRKKNTEVVI 172
                      444444555555666666677777777777777777777776666543114445677888888887766666655555..689999******** PP

        GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn.pvDLkdhWAk 291
                      ng++lD++++P+PvC+CtG+++ CY+WG+GGWqSaCCt ++S+yPLP+++krrgaRiagrKmSqgafkk+LekL++eG dls+  +DLk++WAk
  Zosma28g00980.1 173 NGIDLDIGGIPTPVCTCTGTPQPCYRWGAGGWQSACCTNNLSTYPLPMNSKRRGARIAGRKMSQGAFKKVLEKLTTEGCDLSTvQIDLKSYWAK 266
                      *********************************************************************************9746********* PP

        GAGA_bind 292 HGtnkfvtir 301
                      HGtnkfvtir
  Zosma28g00980.1 267 HGTNKFVTIR 276
                      *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.3E-921276IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-763276IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDDDDALGF MNWGYYDQPL NFRHNNSSNN LGFQLMTNLP TVREDTKNLL TNPSFLHLNN  60
SGIPNPDSST PSENVIDSWI HQEEKISHPF PFIHPTYTPI SDTRLIHYPH LPDPSSTIDK  120
PKPSPSLLPG RRRGFKSSNS KKPKKKPHLE GEESGNNNGR CGRRKKNTEV VINGIDLDIG  180
GIPTPVCTCT GTPQPCYRWG AGGWQSACCT NNLSTYPLPM NSKRRGARIA GRKMSQGAFK  240
KVLEKLTTEG CDLSTVQIDL KSYWAKHGTN KFVTIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143165KKKPHLEGEESGNNNGRCGRRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939970.11e-80protein Barley B recombinant
TrEMBLA0A0K9PCF20.0A0A0K9PCF2_ZOSMR; GAGA-binding transcriptional activator
STRINGXP_008806632.12e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.24e-65basic pentacysteine1