PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma28g00820.1 | ||||||||
Common Name | ZOSMA_28G00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27066.7 Da PI: 10.4641 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 124 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g++++eIrdp +ng +r++lg+f tae+Aa a+++a+ +++g Zosma28g00820.1 124 QYRGVRRRP-WGKFASEIRDPAKNG--ARVWLGTFETAEDAAMAYDRAAFRMRG 174 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.5E-13 | 124 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 124 | 184 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-39 | 124 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 124 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 124 | 183 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-31 | 124 | 184 | No hit | No description |
PRINTS | PR00367 | 5.1E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLLKWTHQVT FISINKDSCV FTNYSESLET TTMPISSIDQ TVATLDSIRR HLLDDTADFP 60 APYDSMVVCD ILNNARARSS RWVPNSLNEN HKMVVKEERE LVATAPPPAA VTEVKKSKVV 120 KAKQYRGVRR RPWGKFASEI RDPAKNGARV WLGTFETAED AAMAYDRAAF RMRGSRAMLN 180 FPNSVGTDSH TVLKSSSSGS GKRASPEPQS SSETENKRKK IESGWNQVPA RTVQFGLGFR 240 RI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-36 | 120 | 185 | 1 | 66 | ATERF1 |
3gcc_A | 9e-36 | 120 | 185 | 1 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 131 | KKSKVVKAKQYRGVRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549934.1 | 2e-42 | ethylene-responsive transcription factor 1A | ||||
Refseq | XP_028208223.1 | 2e-42 | ethylene-responsive transcription factor 1A-like | ||||
TrEMBL | A0A0K9PER1 | 1e-180 | A0A0K9PER1_ZOSMR; Ethylene-responsive transcription factor 2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 2e-24 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma28g00820.1 |