PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00760.1
Common NameZOSMA_28G00760
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 229aa    MW: 26093.2 Da    PI: 9.5581
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00760.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.31.5e-07203224122
          G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                      kpr++W+  LH++F  av+qLG
  Zosma28g00760.1 203 KPRVVWSFHLHQKFCTAVNQLG 224
                      79*******************5 PP
2Response_reg72.12.2e-24501581109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl++dD+++ ++ll+ +l+k  y +v++++++++al ll+ ++  +D+++ D+ mp+mdG++ll+ i  e  +lpii++++ g ++++ + +  
  Zosma28g00760.1  50 VLVIDDDRTSLKLLEHMLRKCLY-DVTVCSESRKALSLLRGSKdrFDIVISDVHMPDMDGFKLLELIGLEM-DLPIIMMSGDGRSSTVMRGIIH 141
                      89*********************.***************766667**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga ++l Kp+ ++el +
  Zosma28g00760.1 142 GACEYLIKPVRMQELKT 158
                      *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-3447175IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-3947187No hitNo description
SMARTSM004483.3E-2748160IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.12149164IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-2250159IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.17E-2551163No hitNo description
Gene3DG3DSA:1.10.10.602.3E-7200227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKHDKIAQLR SPGIWRLFGC RRSMMASEGR RSSSSPEGET LDRFPAGLRV LVIDDDRTSL  60
KLLEHMLRKC LYDVTVCSES RKALSLLRGS KDRFDIVISD VHMPDMDGFK LLELIGLEMD  120
LPIIMMSGDG RSSTVMRGII HGACEYLIKP VRMQELKTIW QHAVRKNLNI DRRQYVKPQR  180
KRPSETAADE DQLNNDEPSA SKKPRVVWSF HLHQKFCTAV NQLGIDST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020687347.18e-80two-component response regulator ORR21 isoform X1
RefseqXP_020687348.16e-80two-component response regulator ORR21 isoform X2
RefseqXP_028557214.15e-80two-component response regulator ORR21 isoform X3
SwissprotB8B3I43e-68ORR22_ORYSI; Two-component response regulator ORR22
TrEMBLA0A0K9PCN41e-168A0A0K9PCN4_ZOSMR; Uncharacterized protein
STRINGPOPTR_0008s13490.16e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1204346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-66response regulator 2