PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma28g00070.1
Common NameZOSMA_28G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 292aa    MW: 33351.6 Da    PI: 8.5524
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma28g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-4037113278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      Cqv++C+++l+ akeyhrrhkvCe+hskap++lv++++qrfCqqCsrfh +sefDe+krsCrrrLa+hn rrrk q+
  Zosma28g00070.1  37 CQVDNCKVNLTAAKEYHRRHKVCEAHSKAPEILVEKQKQRFCQQCSRFHLISEFDEGKRSCRRRLADHNLRRRKIQP 113
                      **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-333198IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.16334111IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-3735115IPR004333Transcription factor, SBP-box
PfamPF031109.5E-3137110IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEEGDVVEIG LMTTGVVRTN KILRSESPTR SNEYPSCQVD NCKVNLTAAK EYHRRHKVCE  60
AHSKAPEILV EKQKQRFCQQ CSRFHLISEF DEGKRSCRRR LADHNLRRRK IQPEDALLSS  120
SSSSYILPSI YYLQGNRMNP PTIINPPFPS PIARDQLVEN GLRGNSLLVI IADENICREL  180
RELELDFEDT GNENSIVHFL NELGWLFQRT KSPQLYSFRS KQSYQGFLKH KIGLNSWNTL  240
LDSNGRTPFA CAESENNHKS YNEVVAKKIA NKENSQYSIS IVDSSKEKTG Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28371101184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575955.15e-44squamosa promoter-binding-like protein 15
TrEMBLA0A0K9PCG40.0A0A0K9PCG4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.13e-33squamosa promoter binding protein-like 14