PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma281g00080.1
Common NameZOSMA_281G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 460aa    MW: 50564.2 Da    PI: 7.1106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma281g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Zosma281g00080.1 14 KGLWSPEEDEKLLRHITEHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP
2Myb_DNA-binding41.72.6e-1367110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++++E++l+++++  lG++ W+ Ia+ ++ gRt++++k+ w++
  Zosma281g00080.1  67 RGTFSQQEEDLIIELHGVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                       899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.894965IPR017930Myb domain
SuperFamilySSF466891.05E-2812108IPR009057Homeodomain-like
SMARTSM007174.1E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
CDDcd001674.78E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129419.36366116IPR017930Myb domain
SMARTSM007171.3E-1166114IPR001005SANT/Myb domain
PfamPF002494.0E-1267110IPR001005SANT/Myb domain
CDDcd001672.48E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT EHGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHGVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLKQRG  120
IDPNTHKPLS ETTDVSEDTV VDMNNITGTT GKILPIGSEK SAAKIFSNDG FDNSGRANNT  180
MGITAGAAGC ATTKGGKFVN KYRTGEKMDY FSMNYGSDVA TSSANPLLWF NQPSTPFDMI  240
GSDYNCSTIS SVHPPVSNSI LPSTPPPTGL KSSIFNLFQE NPLPPTHNTL SGIRYWEGAG  300
GASSNCSTGT SGNSNNSINE LHRNASFFDT LTGGEAITVG AGIYLWSELS PGKETQNINL  360
EGDPDEFKWS EFFHGVPNTS PLSSLEIHGG LNQNPFSGDI KLETPFNIDG LNTWQQQQAP  420
APQQQQHDER LQKQKQQQDV TGTYYGKEFQ RLSAAFGQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PF910.0A0A0K9PF91_ZOSMR; Myb domain protein 61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-85myb domain protein 55