PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma27g00800.1
Common NameZOSMA_27G00800
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 433aa    MW: 47599.8 Da    PI: 8.0088
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma27g00800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.3e-41102178278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrrhkvCe+hsk+pvv+v+g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Zosma27g00800.1 102 CLVDGCKSDLSNCRDYHRRHKVCEAHSKTPVVFVAGQEQRFCQQCSRFHQLVEFDEVKRSCRKRLDGHNKRRRKPQP 178
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-3394163IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.72799176IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-38100181IPR004333Transcription factor, SBP-box
PfamPF031102.7E-30102175IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDWGDMKIPS WDLSELEHDT EPNIGVTASS SGGGGSGGMG HRKIETDCSV DLKLGGLEDF  60
GCSSSSRWKD HLKIPTLAVS TNHPGPSRRS RAQNNGSQKV SCLVDGCKSD LSNCRDYHRR  120
HKVCEAHSKT PVVFVAGQEQ RFCQQCSRFH QLVEFDEVKR SCRKRLDGHN KRRRKPQPEA  180
LRTGSLLPNL QVPQFSSYSH MFPATVPDPM WGGSVVKEED NILYRFHQPP LHFNLNRQHS  240
FPPPESSSYA RSYPEGKSFP FLQDHDAAAA GVGGERSLGL QTSCCQPLIN TISFSGSNSN  300
SNGSKFFSSH RHHQQQHQQQ SRGLTQVRDS DCALSLLSSP TQTPSVDHHH IPVGQPLAQS  360
LQQQFRGLIS YPPRSQSSNN VSTTGFSCSG MENEHVVSNV LVSGATNDVT DLQCSGTFHP  420
PSSSALPFSW PQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281021751184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158175KRSCRKRLDGHNKRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801848.11e-127squamosa promoter-binding-like protein 16
TrEMBLA0A0K9PFL30.0A0A0K9PFL3_ZOSMR; Squamosa promoter-binding protein
STRINGXP_008801848.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-50SBP family protein