PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g01250.1
Common NameZOSMA_26G01250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 638aa    MW: 70388.4 Da    PI: 5.9064
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g01250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.22.7e-822726353374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      ++Ll++Ae+ + g+   a ++Larl++l s dg+p  R a+y++e L + l+     ++ k    +++ s+++ + +++a+k fse+sPil+f+
  Zosma26g01250.1 272 DQLLSAAEFAQVGNSGHACEILARLNQLLSLDGNPALRSAFYLKESLYSLLVAeDNGSIIKRRpMTTAFSSMDIILKINAYKDFSELSPILQFT 365
                      79***********************************************999854445555552677788888********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvak 184
                      ++t+ q+Ile+++g++++HiiDfdi+ G +W+++l +L++R+  + + RiT+v+sp ++     + el   ++ L+++A +l++pfefn++   
  Zosma26g01250.1 366 NFTCIQTILEEINGCDHIHIIDFDIGVGSHWASFLLELSQRST-ATTARITAVVSPIPSdnrnPSLELILARDTLTQLAGTLKIPFEFNIM--- 455
                      *****************************************65.5789*******9888886777788888999****************7... PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++ ++++ +L ++pg a aVn+ ++l ++           + +L+lv++lsPk+vv ++ ++d+++ sF ++fl++l+ ++al++slea+ +++
  Zosma26g01250.1 456 SIGAFNPAAL-LEPGTANAVNVPVSLTYTS-----P----PIFLHLVNQLSPKIVVSIDTNCDRSNLSFSQHFLHTLHSCTALLESLEAT-GAN 538
                      99********.9************999996.....3....46***********************************************9.99* PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvs 369
                      s+  +k+Er ++++++++++++++++r e  e+   Wr  ++ +GF pv++s++++ qa+++l++++    +g+rve+++ slvl W++ +L s
  Zosma26g01250.1 539 SDVSTKIERLVVQPRVEDAIMTSHRRRHE--ESTIPWRTLFTLSGFAPVAFSKFTEVQAECILKRIPtteTRGFRVEKRQSSLVLFWERFELAS 630
                      **********************9998554..45589****************************987544689********************* PP

             GRAS 370 vSaWr 374
                      vSaWr
  Zosma26g01250.1 631 VSAWR 635
                      ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.127244612IPR005202Transcription factor GRAS
PfamPF035149.3E-80272635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MRKTSWKLEA KGRRVWNNND DDDKQRREGL EPRSVLENRT SPSPRSSSTF GSTGAGVADL  60
SGNPATGRRK EWEQPAMGLQ QPIIVPTALD KCGLGVEEWD SLLCSRGIAS AMGSEMPPFL  120
GCTVEDSDEF SSVVVPPPEL EFGGIDLYWG FPQKISESES VASGGGFPPP SQQHTAGDGG  180
NNPISASLSP FSIMPQGMFY QENMFQINHH QDQPLSFSSL DHHHHLLPLL SQQTNNRSIP  240
DPTGSFTCSG QRFFGGHHEN RNQQQQQQAL FDQLLSAAEF AQVGNSGHAC EILARLNQLL  300
SLDGNPALRS AFYLKESLYS LLVAEDNGSI IKRRPMTTAF SSMDIILKIN AYKDFSELSP  360
ILQFTNFTCI QTILEEINGC DHIHIIDFDI GVGSHWASFL LELSQRSTAT TARITAVVSP  420
IPSDNRNPSL ELILARDTLT QLAGTLKIPF EFNIMSIGAF NPAALLEPGT ANAVNVPVSL  480
TYTSPPIFLH LVNQLSPKIV VSIDTNCDRS NLSFSQHFLH TLHSCTALLE SLEATGANSD  540
VSTKIERLVV QPRVEDAIMT SHRRRHEEST IPWRTLFTLS GFAPVAFSKF TEVQAECILK  600
RIPTTETRGF RVEKRQSSLV LFWERFELAS VSAWRCC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-252706354375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PGL60.0A0A0K9PGL6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-81GRAS family protein