PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma26g00750.1
Common NameZOSMA_26G00750
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 297aa    MW: 33514.1 Da    PI: 5.1789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma26g00750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-1769119155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++  +g+Wv eIr+p   + r  r +lg+f t  eAa a+++a+k+++g
  Zosma26g00750.1  69 CNYRGVRQRT-WGKWVTEIREP---N-RgHRLWLGTFPTSLEAALAYDEAAKAMYG 119
                      56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1369119IPR001471AP2/ERF domain
CDDcd000182.31E-3069128No hitNo description
Gene3DG3DSA:3.30.730.104.1E-2970128IPR001471AP2/ERF domain
PROSITE profilePS5103220.87770127IPR001471AP2/ERF domain
SMARTSM003802.1E-3470133IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1870127IPR016177DNA-binding domain
PRINTSPR003675.7E-97182IPR001471AP2/ERF domain
PRINTSPR003675.7E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTEHERKKRR RSRQNGPDSI SITLAKWKQL NRQLENSKDG DRQQIHKVPA KGSKKGCMKG  60
KGGPENSNCN YRGVRQRTWG KWVTEIREPN RGHRLWLGTF PTSLEAALAY DEAAKAMYGS  120
SARLNLPECS SSSSSFTKSL DSSDSTDSVM VQNPACSSVV KDHGSNKTEL TKEGDDKRQE  180
SESKMKIPEV EELQPLKKEE LDKDESDPHL EDLPDMFDID EVIRTIDMDP KLNQDYQATQ  240
YLGSSLMDSE FDTSEFVGGD LSQQPYPGTG QDLNFMESHF TQGVELKEFY FNDLGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1770127260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020267191.13e-72dehydration-responsive element-binding protein 2B-like
TrEMBLA0A0K9PEE10.0A0A0K9PEE1_ZOSMR; Ethylene-responsive transcription factor 1
STRINGXP_008799804.12e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.15e-33DRE-binding protein 2A