PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma26g00160.1

Common Name

ZOSMA_26G00160

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

BES1

Protein Properties

Length: 651aa MW: 73934.6 Da PI: 6.3731

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma26g00160.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	119.8	3.9e-37	51	142	3	95
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l+ raD+n+V+ AL+reAGw+v +DGtt + +s + + + + ++ s+ Zosma26g00160.1 51 GKRCRPKEEKERTKLRERHRRAITARILAGLRRHGNYNLRIRADINDVIGALAREAGWTVFPDGTTIPSQSTVQ-TRRPITQIPPLQTVSPCD 142 6788999************************************************************9544444.344444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.6E-34	52	166	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.23E-171	212	643	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.2E-189	215	643	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.7E-102	221	634	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	252	266	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	273	291	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	295	316	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	299	307	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	2.0E-7	378	387	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	6.4E-64	388	410	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	461	480	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	495	511	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	512	523	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	6.4E-64	530	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.0E-7	533	543	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	6.4E-64	566	588	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.0E-7	617	631	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.0E-7	632	646	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MEEKVGGSSE EDEEEEGMYI DMGIKEEEDG ENSHDGILME GHQTQTQTQQ GKRCRPKEEK 60 ERTKLRERHR RAITARILAG LRRHGNYNLR IRADINDVIG ALAREAGWTV FPDGTTIPSQ 120 STVQTRRPIT QIPPLQTVSP CDMRSQPYHM KEVYVPPTSS LNMSSECCRK KGMGSGERVG 180 SVENSPLVEG RLVGNGVKQL NDMSSKEQER DFTGTSYVPV FVMLPLGIIN LKCELINPDA 240 LLKNLRLLKS INIDGVMVGC WWGIVEAHAP QNYNWNGYYQ LFQIARDVKL KIKVAMSFHE 300 CGGNVGDDVC IPLPRWVEEI GRSNPDIYFT DREGRRNTEC LTWGIDKERV LRGRTAVEVY 360 YDFMRSFRVE LDGFFEDGVI SDIEIGLGPC GELRYPSCPT KNGWRYPGIG EFQCYDQYLL 420 KSLRKAARDR GHSWLAKGPD NAGTYNSHPH ETGFFCDGGE YERYYGRFFL KWYSQVLLDH 480 ADRVLYMAKL VFEGTCIAAK LSGIHWWYKT ASHAAELIAG FYNPSIRDGY SSVAAILRAH 540 KTTLNFACTI DQHENFPEAM SDPEGLVWQV LNAAWDASIA VSSENTFPCY DRNGYNKILE 600 NAKPYDNPDG RHLAAFTYLR LSPVLMNREN FLEFERFVKK IHGVVIDNQV *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MEEKVGGSSE EDEEEEGMYI DMGIKEEEDG ENSHDGILME GHQTQTQTQQ GKRCRPKEEK  60
ERTKLRERHR RAITARILAG LRRHGNYNLR IRADINDVIG ALAREAGWTV FPDGTTIPSQ  120
STVQTRRPIT QIPPLQTVSP CDMRSQPYHM KEVYVPPTSS LNMSSECCRK KGMGSGERVG  180
SVENSPLVEG RLVGNGVKQL NDMSSKEQER DFTGTSYVPV FVMLPLGIIN LKCELINPDA  240
LLKNLRLLKS INIDGVMVGC WWGIVEAHAP QNYNWNGYYQ LFQIARDVKL KIKVAMSFHE  300
CGGNVGDDVC IPLPRWVEEI GRSNPDIYFT DREGRRNTEC LTWGIDKERV LRGRTAVEVY  360
YDFMRSFRVE LDGFFEDGVI SDIEIGLGPC GELRYPSCPT KNGWRYPGIG EFQCYDQYLL  420
KSLRKAARDR GHSWLAKGPD NAGTYNSHPH ETGFFCDGGE YERYYGRFFL KWYSQVLLDH  480
ADRVLYMAKL VFEGTCIAAK LSGIHWWYKT ASHAAELIAG FYNPSIRDGY SSVAAILRAH  540
KTTLNFACTI DQHENFPEAM SDPEGLVWQV LNAAWDASIA VSSENTFPCY DRNGYNKILE  600
NAKPYDNPDG RHLAAFTYLR LSPVLMNREN FLEFERFVKK IHGVVIDNQV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-145	216	643	10	443	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255371.1	0.0	PREDICTED: beta-amylase 2, chloroplastic-like isoform X1
Refseq	XP_010255372.1	0.0	PREDICTED: beta-amylase 7-like isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0K9PE86	0.0	A0A0K9PE86_ZOSMR; Beta-amylase
STRING	XP_010255371.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Zosma26g00160.1

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]