PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma267g00300.1 | ||||||||
Common Name | ZOSMA_267G00300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28965.3 Da PI: 5.2306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ +Ed l+ ++++G ++W++ ++ g+ R++k+c++rw++yl Zosma267g00300.1 17 KGPWSLDEDNFLISHIQKYGHKNWRALPKLAGLQRCGKSCRLRWNNYL 64 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.5e-14 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T eE+e++++ ++++G++ W++Ia++++ gRt++++k+ w++ Zosma267g00300.1 70 RGNYTLEEEEIIIKSHELMGNK-WSAIAAKLP-GRTDNEIKNIWHTN 114 899*******************.*********.*********99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.434 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-10 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 22.253 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-13 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-24 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-9 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MTRSPGSSRT TRTGLKKGPW SLDEDNFLIS HIQKYGHKNW RALPKLAGLQ RCGKSCRLRW 60 NNYLSPDIKR GNYTLEEEEI IIKSHELMGN KWSAIAAKLP GRTDNEIKNI WHTNLKKKIH 120 GGPNSEKKKV SSIHQLNNNI TEEKEEGLDN KCKVEQSCPS PETTTEVSTA STYDLEEDEL 180 TLFEMPIIDE SFWSVNETDD NEKITTVDHS IMDSDGAFAG SFPEDSIMDF WLKIFLDSTN 240 GINDFDGAQV HQLGF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-30 | 15 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027938414.1 | 3e-69 | transcription factor MYB15-like | ||||
TrEMBL | A0A0K9PGW6 | 0.0 | A0A0K9PGW6_ZOSMR; Myb domain protein 15 | ||||
STRING | GLYMA20G35180.1 | 1e-65 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-59 | myb domain protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma267g00300.1 |