PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma265g00020.1
Common NameZOSMA_265G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 356aa    MW: 41275.1 Da    PI: 6.4289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma265g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.2e-5471361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       +ppGfrFhPtdeelv++yL+kk++++k++l +vike+d+yk+ePwdL+ +  ++ + eekewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Zosma265g00020.1   7 VPPGFRFHPTDEELVDYYLRKKLAARKIDL-DVIKEIDLYKIEPWDLQeEkcRIGTeEEKEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 98 
                       69****************************.9***************8435533333667********************************* PP

               NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+++s k++lvg++ktLv+ykgrap+g+k+dW++heyr+
  Zosma265g00020.1  99 KPIYS-KRNLVGMRKTLVYYKGRAPNGQKSDWIIHEYRV 136
                       *****.899****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-585157IPR003441NAC domain
PROSITE profilePS5100558.277157IPR003441NAC domain
PfamPF023656.4E-278136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKLA ARKIDLDVIK EIDLYKIEPW DLQEEKCRIG  60
TEEEKEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKP IYSKRNLVGM RKTLVYYKGR  120
APNGQKSDWI IHEYRVQTDI NGNPQEEGWV VCRIFRKRMA MVQRNYQEPT CWNIEERISL  180
NSNIIPDLES SESNKHNLHR PNYNMNNSCN FKKETDQLRV QPLNFQDQLG SYVNIQENNT  240
PLVHLQNPSY PLVAQEEAIL LQPDNLYHLL QQQHPSMVNS SLSSSSSSRN IDDNVTDWRL  300
LDRFVASQLS QDDDQILDGR GNLSNSINAV DDELGRALSD LASTSASTCQ IDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48615814169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264210.11e-122PREDICTED: NAC domain-containing protein 7
RefseqXP_017220916.11e-122PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-112NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A0K9PGY70.0A0A0K9PGY7_ZOSMR; NAC domain-containing protein 7
STRINGXP_010264210.11e-121(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.17e-94NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]