PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma261g00130.1
Common NameZOSMA_261G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 770aa    MW: 85799.5 Da    PI: 6.4445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma261g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07479502226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       k + C f++  G C+ G++C+F+H+
  Zosma261g00130.1 479 KVVYCEFYLN-GRCQKGASCNFSHD 502
                       7889**9998.*************7 PP
2zf-CCCH21.15.3e-07536556525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       +C++f  +GtC +G++CkF+H
  Zosma261g00130.1 536 PCHNFTSSGTCIRGETCKFSH 556
                       7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.394477504IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4477503IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6477502IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5479502IPR000571Zinc finger, CCCH-type
SMARTSM003560.093506532IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.596506533IPR000571Zinc finger, CCCH-type
SMARTSM003560.5534558IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6535560IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.033536559IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5536556IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4536557IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MSHLSPRNIR RQTLYGSASY QSLIEFPLQF DNSLDQAKVR DVHVQSGEIE NDSVKSKIID  60
FGLNVQKDHL FLNRETQDVV GDEGIEKNVA SDEDKDSKGW ACGSEVIEEE NKIMGRDTAA  120
NGNSNNSRVF LGHALGHFEK LLNLDDRSFR LENDSQLGIL EIENDLNGLI SFSEKQSYCH  180
EDKLQNKSPD HEALNKFNSL DHNVPSVVVS GDRNVDQVHK ESDATIKTTQ SDVPEAEFSI  240
IVQESSDDKV KNDMQVDSAN VSVISGANNS DVVPSDVNLE DGEIPDVFGD VDPSSHSQND  300
HFEIGEHIIE DMSNTYVESK NIASRYVMEE DKIASHDLAK RIDSRNASSS IVDYSDLYSS  360
NHAFKKKSSN LPNLKKGGTQ TKKDDGHKLL PSVPKFDKSV RDNISLPEVF SEKMPNMDLQ  420
KESNSENDEF TEKKKRKKGP MTEGRKAKKK IQRKRKRAEL NRKLGIKRLK IEPFSMPKKV  480
VYCEFYLNGR CQKGASCNFS HDTIPLTKSQ PCKYFACDSC LKGEDCQFDH DLWKYPCHNF  540
TSSGTCIRGE TCKFSHKVQI NPVENADKKQ DMLNLSERTT IRDTNASIFP KAVKNSPMNP  600
RSNALNVDNT GNKPSADHLP GTISRVIPKG ITFLSFGKNT PEKHTKSDKK SQLEKHSNSI  660
VSSNANSTPT NTAMDNAAKG INSITLDRNE SKDVKSLGDK FFKSSDVEMQ PTLTPKMPSV  720
ALSTGVVKFS DFISDSGNKE ALTTKEASKS SSQSEASKIL EEFLFCDSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433437KKRKK
2435456RKKGPMTEGRKAKKKIQRKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PHC60.0A0A0K9PHC6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.28e-07C3H family protein