PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma25g01260.1 | ||||||||
Common Name | ZOSMA_25G01260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21260.3 Da PI: 10.5761 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.7e-20 | 111 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p+ + +r++lg+f taeeAa +++a+ +++g Zosma25g01260.1 111 NYRGVRRRP-WGKWVAEIRNPK----QaTRVWLGTFETAEEAALSYDRAAIEFHG 160 59*******.**********94....46*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 111 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.96E-35 | 111 | 167 | No hit | No description |
PROSITE profile | PS51032 | 24.012 | 111 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 111 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 111 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-36 | 111 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-12 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-12 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MVGQKSNIPK SKPLPSLPII PEESPFPPLS PSLPIIPSLP PLSPLQPFGM TLDQESSIIT 60 STLLHIISNY TTPAPVIPIP RSTAVEGESD REKNNRGNNS DNFKKKKKKK NYRGVRRRPW 120 GKWVAEIRNP KQATRVWLGT FETAEEAALS YDRAAIEFHG PRAKLNFSPT LDRGGERSET 180 TTAMFPEFKG S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 108 | 167 | 2 | 62 | ATERF1 |
3gcc_A | 5e-23 | 108 | 167 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 109 | KKKKKKK |
2 | 103 | 117 | KKKKKKKNYRGVRRR |
3 | 104 | 118 | KKKKKKNYRGVRRRP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080968.1 | 3e-33 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A0K9PFL2 | 1e-135 | A0A0K9PFL2_ZOSMR; Uncharacterized protein | ||||
STRING | MLOC_67996.1 | 7e-33 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 9e-29 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Zosma25g01260.1 |