PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma252g00020.1
Common NameZOSMA_252G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 273aa    MW: 30343.7 Da    PI: 5.9528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma252g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66.1e-13120164347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
  Zosma252g00020.1 120 PWTEEEHKLFLLGLSKFGKGDWRSISRNYVISRTPTQVASHAQKY 164
                       7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.539466IPR017877Myb-like domain
SMARTSM007176.7E-4868IPR001005SANT/Myb domain
CDDcd001674.34E-51166No hitNo description
SuperFamilySSF466895.53E-51172IPR009057Homeodomain-like
PROSITE profilePS5129416.701112169IPR017930Myb domain
SuperFamilySSF466891.22E-16115170IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-17117167IPR006447Myb domain, plants
SMARTSM007172.0E-10117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10118163IPR009057Homeodomain-like
CDDcd001673.63E-9120165No hitNo description
PfamPF002491.9E-11120164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSLEEAEGEG KWTREEDEAF ETALADALPW KSEEEDEGDM RRWEELVGKV GTKTIEEVRK  60
HYETLVDDIG AIEAGKVEVP NYVGEEEEEV EKEKGSESVD GGGGKSGLSK ADQERRKGIP  120
WTEEEHKLFL LGLSKFGKGD WRSISRNYVI SRTPTQVASH AQKYFIRLNS MNRDRRRSSI  180
HDITSVNNVD VLSSSQTSSI GSSTKHPPPQ PQVNMHGVGI YGVNHHMVSA VGTPVMLPSG  240
HPHSHPHPHP HQHPPYVVPM AYPIQPPPAM HQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.15e-96transcription factor MYBS1
SwissprotB8A9B21e-72MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-72MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A0K9PG120.0A0A0K9PG12_ZOSMR; Myb family transcription factor
STRINGXP_010265272.18e-93(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-57MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]