PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma250g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 18161.3 Da PI: 4.2713 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.1 | 1e-16 | 11 | 60 | 2 | 51 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkv 51 pGfrFhPt+eelv +yL++kv +++ +++ evi+++d+y++ePwdL+ v Zosma250g00090.1 11 LPGFRFHPTEEELVGYYLTRKVCSSQeIDV-EVITDIDLYRIEPWDLQGFV 60 69*******************887774777.99**************8433 PP | |||||||
2 | NAM | 54.1 | 5.2e-17 | 74 | 123 | 2 | 50 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.k 50 pGfrFhPt+eelv +yL++kv +++ +++ evi+++d+y++ePwdL++ + Zosma250g00090.1 74 LPGFRFHPTEEELVGYYLTRKVCSSQeIDV-EVITDIDLYRIEPWDLQAtR 123 69*******************887774777.99**************8422 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-16 | 7 | 60 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.566 | 10 | 56 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-7 | 12 | 54 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-16 | 64 | 123 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 19.434 | 73 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-8 | 75 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MEVESSSLGV LPGFRFHPTE EELVGYYLTR KVCSSQEIDV EVITDIDLYR IEPWDLQGFV 60 SAHMEVESSS LGVLPGFRFH PTEEELVGYY LTRKVCSSQE IDVEVITDID LYRIEPWDLQ 120 ATRTRSIRPE QEPTEQQTLG FGKRQGETRL WSLRTES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930821.1 | 5e-21 | NAC domain-containing protein 37 | ||||
Swissprot | O65508 | 3e-19 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | A0A0K9PI97 | 4e-81 | A0A0K9PI97_ZOSMR; Uncharacterized protein (Fragment) | ||||
STRING | XP_008781655.1 | 3e-20 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 1e-21 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
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Phytozome | Zosma250g00090.1 |
Publications ? help Back to Top | |||
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