PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma250g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 158aa    MW: 18161.3 Da    PI: 4.2713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma250g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.11e-161160251
               NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkv 51
                       pGfrFhPt+eelv +yL++kv +++ +++ evi+++d+y++ePwdL+  v
  Zosma250g00090.1 11 LPGFRFHPTEEELVGYYLTRKVCSSQeIDV-EVITDIDLYRIEPWDLQGFV 60
                      69*******************887774777.99**************8433 PP

2NAM54.15.2e-1774123250
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.k 50 
                        pGfrFhPt+eelv +yL++kv +++ +++ evi+++d+y++ePwdL++ +
  Zosma250g00090.1  74 LPGFRFHPTEEELVGYYLTRKVCSSQeIDV-EVITDIDLYRIEPWDLQAtR 123
                       69*******************887774777.99**************8422 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-16760IPR003441NAC domain
PROSITE profilePS5100511.5661056IPR003441NAC domain
PfamPF023652.5E-71254IPR003441NAC domain
SuperFamilySSF1019413.92E-1664123IPR003441NAC domain
PROSITE profilePS5100519.43473157IPR003441NAC domain
PfamPF023658.0E-875124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEVESSSLGV LPGFRFHPTE EELVGYYLTR KVCSSQEIDV EVITDIDLYR IEPWDLQGFV  60
SAHMEVESSS LGVLPGFRFH PTEEELVGYY LTRKVCSSQE IDVEVITDID LYRIEPWDLQ  120
ATRTRSIRPE QEPTEQQTLG FGKRQGETRL WSLRTES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930821.15e-21NAC domain-containing protein 37
SwissprotO655083e-19NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A0K9PI974e-81A0A0K9PI97_ZOSMR; Uncharacterized protein (Fragment)
STRINGXP_008781655.13e-20(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-21NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]