PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma248g00430.1 | ||||||||
Common Name | ZOSMA_248G00430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | AP2 | ||||||||
Protein Properties | Length: 364aa MW: 40440.6 Da PI: 9.2084 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 88 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Zosma248g00430.1 88 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 137 78*******************......44************************998 PP | |||||||
2 | AP2 | 37.5 | 5.7e-12 | 180 | 230 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+ +k g+W+A+ +se +k+++lg f t+eeAa+a+++a ++++g Zosma248g00430.1 180 SKYQGINLHK-CGSWEARMSQFSE---KKYVYLGLFETEEEAARAYDKATLNFNG 230 89********.7******777755...5********************9888766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-10 | 88 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-16 | 88 | 145 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-17 | 89 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.741 | 89 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.00E-11 | 89 | 144 | No hit | No description |
SMART | SM00380 | 9.6E-30 | 89 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-15 | 180 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-7 | 180 | 229 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-21 | 180 | 240 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 181 | 238 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.448 | 181 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-24 | 181 | 244 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MWDLNHLPCD QTREGGNALG GNAAGGGKRE ERFFPNGNNI TAPIIFTHQF FPVENATGRY 60 CLSQQTQVEV GVSRPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDSG KQVYLGGFDT 120 AHAAARAYDR AAIKFRGLSA DINFILDDYR DDMNQMRSLS KEEFVHILRR QSTGFPKSSS 180 KYQGINLHKC GSWEARMSQF SEKKYVYLGL FETEEEAARA YDKATLNFNG KNAVTNFDPS 240 LYQMELESQS GEHDLDLSLG SSGSKRNNLE SPDITNSSNS VGMVRQQYQL PRSSSSGNMS 300 LGSCGTQQTN QTQVSPFWTN WPASTSTAAS SGFLSPLSSS TVSQSSSNWS VENSGFYSIM 360 KPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932035.1 | 3e-97 | floral homeotic protein APETALA 2 isoform X4 | ||||
Swissprot | P47927 | 1e-88 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0K9PGL8 | 0.0 | A0A0K9PGL8_ZOSMR; AP2-like ethylene-responsive transcription factor TOE3 | ||||
STRING | GSMUA_Achr4P06100_001 | 1e-96 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 6e-82 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma248g00430.1 |