PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma244g00060.1 | ||||||||
Common Name | ZOSMA_244G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 20305.9 Da PI: 9.6151 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9.2e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Zosma244g00060.1 65 FTCNYCQRKFYSSQALGGHQNAH 87 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.12E-6 | 62 | 92 | No hit | No description |
PROSITE profile | PS50157 | 10.907 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTIETIIKQH RRSYFNSPAI ASSLIIVAAM GHHHQMELQR EPLSLELTLS GSHLSSLQQI 60 PHRFFTCNYC QRKFYSSQAL GGHQNAHKFE RRLVKRRRQM GGINFNPHAI VASCLPLEFI 120 MNGSFVAQGS PDNSNSSSQH HVTRFAQIAS GGGDTYVPIN EKQENRSSSS SDDNLDLSLR 180 L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 96 | RLVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PGS0 | 1e-131 | A0A0K9PGS0_ZOSMR; Zinc finger protein 2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-17 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Zosma244g00060.1 |