PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g01510.1
Common NameZOSMA_23G01510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CAMTA
Protein Properties Length: 1058aa    MW: 119470 Da    PI: 6.2831
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g01510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.58.2e-56201362118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ +krwl++ ei++iLen++k+ +  e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+ ++fq
  Zosma23g01510.1  20 LEAQKRWLRPAEICEILENHTKFYINPEPPHKPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEDCSNFQ 113
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rrcywlL+e++ +ivlvhylevk
  Zosma23g01510.1 114 RRCYWLLDEKQMNIVLVHYLEVK 136
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.80215141IPR005559CG-1 DNA-binding domain
SMARTSM010766.7E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.6E-5467559IPR013783Immunoglobulin-like fold
PfamPF018331.1E-6471557IPR002909IPT domain
SuperFamilySSF812963.5E-15471558IPR014756Immunoglobulin E-set
PROSITE profilePS5029720.633638777IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-18649767IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.5E-19661769IPR020683Ankyrin repeat-containing domain
CDDcd002049.57E-17662765No hitNo description
PfamPF127961.1E-7678768IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.538706738IPR002110Ankyrin repeat
SMARTSM002480.0038706735IPR002110Ankyrin repeat
SMARTSM00248350745774IPR002110Ankyrin repeat
SuperFamilySSF525401.59E-8758926IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.8875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.498877905IPR000048IQ motif, EF-hand binding site
PfamPF006120.017879896IPR000048IQ motif, EF-hand binding site
SMARTSM000150.14898920IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.938899923IPR000048IQ motif, EF-hand binding site
PfamPF006120.016901920IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MAENRRYGVT PQLDIRQILL EAQKRWLRPA EICEILENHT KFYINPEPPH KPPSGSLFLF  60
DRKILRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEDCS NFQRRCYWLL  120
DEKQMNIVLV HYLEVKGKET YTRSKDNEEM TRVSHNASPS TSNSAENYNH RVSQDTNNES  180
LSSVRTSEYE DSEPADFQAS SRYNPFAELP RFNTKTMTDA NLLNPYIQGT IPGQKIESDR  240
FFVDQEDITK IFDETGSGYT FNGSRMQSDL TSWGDVLEHC KEGFQDELFP PAFGLNSIPS  300
GIQTPDGDGT VSTQGESEWK FSDQEPDFSA LSNLDVKKTP VQEVAKYHSL LKQLSLDMPN  360
GEESGFPIVS NLDAKKTPVK EVSQYHSLLK QLSLDMPNRE GEKDLQKHDS FSQWMSREEF  420
GEVGGSHIQS SYGMYWDAVL GGSNDSTMSH QDNSDTYLLS PSLSQDQYFS IKDFSPNWAY  480
SESGSTKILI TGTFLLDKID IAKYNWSCMF SEVEVPAMVL ADGLLQCYAP SRKPGRIPFY  540
VTCSNRLACS EVREFEYRDK HAQYLDTFSS GSSPEITLYL RLERILSEVS FSCLEPLTGA  600
LNGKAHTCHK ISALLETDGG FPLVSKKGYE KGVLIEKTAQ HPLQQTMLKE KLHAWLLHKV  660
AEDGKGPNIL DKEGQNVIHL ASALGYDWVI APTLVAGVNI NFRDIHGWTA LHWAASFGRE  720
TTVITLLSLG AAPGAVTDPT TDFPSGRTPA DFAANNGHKG IAGFLAESSL TSHLSSLNLN  780
QSLENNVSDI YDIKATEDAK KNLIKGSDED PLKNSLDAVR SSVQAAARIH QVFRIQSFHR  840
KEQVKCGDDK FGMSNEQALS LVSVKTNKVG NHDEPVQTAA VRIQNKFRGW KGRKEFVILR  900
QRIVKIQALV RGRQVRKHYK KIVWSVGIVE KVILRWRRKG SGLRGFRSEA LIEGPAMQVV  960
QAKEDDYDFL QDGVKQTEAR LERALARVKS MVQYPEARDQ YKRLLTGVEE FQESKVMLER  1020
ILNDSEENID TDMMFDLDEL LEDDIPMHAA TTSSYYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A6e-1365076746157ank3C2_1
5hry_B6e-1365076746157ank3C2_1
5hry_C6e-1365076746157ank3C2_1
5hry_D6e-1365076746157ank3C2_1
5hry_E6e-1365076746157ank3C2_1
5hry_F6e-1365076746157ank3C2_1
5hry_G6e-1365076746157ank3C2_1
5hry_H6e-1365076746157ank3C2_1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916876.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_019704850.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_029119343.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A0K9PHP10.0A0A0K9PHP1_ZOSMR; Calmodulin-binding transcription activator 3
STRINGXP_008795547.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1