PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma23g00730.1 | ||||||||
Common Name | ZOSMA_23G00730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 287aa MW: 33373.2 Da PI: 10.2017 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.7e-06 | 7 | 30 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ C+FaHg Zosma23g00730.1 7 YKTKLCVLYQR-GRCSR-QACSFAHG 30 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.47E-5 | 4 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-10 | 5 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.389 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MTERKLYKTK LCVLYQRGRC SRQACSFAHG NAELRRFPSE GSFDGRQEYQ NSDLRDKLER 60 RYSPYRKYSP GRNVHGRHDF RNHKQVSHDR GYSPSRSPVR RSERQSDLSI SPRISDGDEG 120 KFKDRNKDPY KERDLQLKLR EAKRDVQYLE DNRNQLMSAL DEKKEEVAKL SSTIEEIEAQ 180 LKKERDDCKR SISKNKKFNK ALGRYLQAQV ELKRSQSKLQ RVADQLDSDN LKSGVNEEDS 240 SINIISDGDY NQFSKHEKKN GASPPKKRSR LSIGTSEEMK SGNLLY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008801339.1 | 2e-89 | zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A0K9PHH2 | 0.0 | A0A0K9PHH2_ZOSMR; Zinc finger CCCH domain-containing protein 13 | ||||
STRING | XP_008801339.1 | 8e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-39 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma23g00730.1 |