PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g00270.1
Common NameZOSMA_23G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 263aa    MW: 29971.4 Da    PI: 9.273
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.67.2e-17698390
             FAR1  3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     Y ++A+++GFsvr  ++k+     + ++  +++++ Csk+g+++     t+ +rr++ ++r+gC a++k k+ + ++kw+ ++++l+HnH+++
  Zosma23g00270.1  6 YYDFASSTGFSVRLGSTKNIldkeTGQKILVMKRLLCSKQGSPNLILPPTNGTRRKNGVSRCGCLASIKFKRIDrSDKWVTDSVNLDHNHPFT 98
                     999**********9998876664344556789************9999999**********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-13698IPR004330FAR1 DNA binding domain
PfamPF105511.4E-6220256IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MADQSYYDFA SSTGFSVRLG STKNILDKET GQKILVMKRL LCSKQGSPNL ILPPTNGTRR  60
KNGVSRCGCL ASIKFKRIDR SDKWVTDSVN LDHNHPFTTP SKIRYLPINR SISHTSKILF  120
SLLADVNVPV SQQAVYFSNQ LGGPENMGCM TLDINNMVRD DRIDLKNYDV DLIVEEFEMK  180
KLKNAHFFYD LVKDDEGRLK HLFWADPTMI ENYKLFGDSV TFDTTYKTNV YSMVFGMFCG  240
VNHHRKTTIF GSAFLKYFVH SL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJF30.0A0A0K9PJF3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-35FAR1-related sequence 5