PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma236g00020.1 | ||||||||
Common Name | ZOSMA_236G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28377.1 Da PI: 9.6149 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.9 | 5.3e-16 | 50 | 142 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +fY YA v F+vr+ +sk + i +++fvCsk+g++ ++ ++ +k +r++ + r +Cka+++ k ++ + +w+v+ ++++H+He Zosma236g00020.1 50 QFYYCYAGYVAFDVRRYSSKLI--DYVIQSKKFVCSKQGESMKKMDTdlveCHKISRKSHNVRESCKAQITFKIDTgSTNWRVHIFVKHHTHE 140 6****************98887..999*************999988889887888999999***************9**************** PP FAR1 89 la 90 l+ Zosma236g00020.1 141 LV 142 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-12 | 50 | 142 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDDDVQTSIS IDSPSRNTNA LSIVNSNDTS PPPPIPYVGQ IFPDLESGRQ FYYCYAGYVA 60 FDVRRYSSKL IDYVIQSKKF VCSKQGESMK KMDTDLVECH KISRKSHNVR ESCKAQITFK 120 IDTGSTNWRV HIFVKHHTHE LVTSKKRRFL RVNRHMSSTS RGLLDSLNSA HIQPSQQYSY 180 TAMASGGFFN LSYTQNDFYN YRRDGRISAC PKDVDLVLDK FENLKSLNPS FFYSIAKDDK 240 GKLKNLF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PK12 | 0.0 | A0A0K9PK12_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-27 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma236g00020.1 |