PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma234g00180.1

Common Name

ZOSMA_234G00180

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

BES1

Protein Properties

Length: 658aa MW: 74461.1 Da PI: 6.3053

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma234g00180.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	136.1	3.6e-42	38	157	7	127
DUF822 7 ptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 ++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+v++DGttyrk + +a ags + + ++ +q+ + Zosma234g00180.1 38 KKEREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALAREAGWTVDADGTTYRKIPNTV-KAVGAGSITFPESTAAMQHLTD 129 679*************************************************************776666.5555555555555555555555 PP DUF822 100 ssalaspvesysaspksssfpspsslds 127 s ++s ++ s +ss++ + + s Zosma234g00180.1 130 SFPVESSLSLTSFINNSSETSLSCHHRS 157 5556666555555555554433333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.5E-40	38	178	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.23E-136	219	653	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.3E-153	220	649	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	9.5E-71	243	598	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	257	271	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	278	296	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	300	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	393	415	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	466	485	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	500	516	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	517	528	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	535	558	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	9.5E-46	572	594	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MEEDHNTTDP LPQPSRRPRG FAASAEKRSP GSGAKGGKKE REKERTKLRE RHRRAITSRM 60 LSGLRQHGNF PLPARADMND VLAALAREAG WTVDADGTTY RKIPNTVKAV GAGSITFPES 120 TAAMQHLTDS FPVESSLSLT SFINNSSETS LSCHHRSVLS VNEEVLSPSL LESVVAMNGI 180 VKDDKYVNTT GHINSTDCFE TDEMLQEVLT SEKGNDYSGS PYIPVYVTLS TGVINSFCQL 240 VEPESLRQEL WCLKSMHVDG VIVNCWWGIV ESWSPQKYIW SGYRDLFNII QEFKLKLQIV 300 LAFNEYSPVV SGDFAITLPK WILEIGKDNQ DIFFTDSEGR RNTECLSWGI DKERVLQGRT 360 GIEVYFDFMK SFRMEFDDLF AEGLISGLEI GLGASGELKY PSFSERMGWS YPGIGEFQCY 420 DKYLQQSLHK AAKLRGHTFW GKAPDNAGHY NSHPYETEFF PARGVYDSYY GRFFLHWYSQ 480 TLIDHADKVL TLARLAFEDT DIIIKIPVVC WWSKTTSHAA ELTAGFYNPQ NRDGYHGIFK 540 MLKKHSVTMK FVCPDSQIIE DNEALADSEG LRLQVIINSA WDQGLTIAAQ NGCRMLDLKR 600 TLEIAKPMDD PDHRHLSFFA YQQPLNAISQ TTDMRLSILE YFVKSMHGIM NHHHNHI*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MEEDHNTTDP LPQPSRRPRG FAASAEKRSP GSGAKGGKKE REKERTKLRE RHRRAITSRM  60
LSGLRQHGNF PLPARADMND VLAALAREAG WTVDADGTTY RKIPNTVKAV GAGSITFPES  120
TAAMQHLTDS FPVESSLSLT SFINNSSETS LSCHHRSVLS VNEEVLSPSL LESVVAMNGI  180
VKDDKYVNTT GHINSTDCFE TDEMLQEVLT SEKGNDYSGS PYIPVYVTLS TGVINSFCQL  240
VEPESLRQEL WCLKSMHVDG VIVNCWWGIV ESWSPQKYIW SGYRDLFNII QEFKLKLQIV  300
LAFNEYSPVV SGDFAITLPK WILEIGKDNQ DIFFTDSEGR RNTECLSWGI DKERVLQGRT  360
GIEVYFDFMK SFRMEFDDLF AEGLISGLEI GLGASGELKY PSFSERMGWS YPGIGEFQCY  420
DKYLQQSLHK AAKLRGHTFW GKAPDNAGHY NSHPYETEFF PARGVYDSYY GRFFLHWYSQ  480
TLIDHADKVL TLARLAFEDT DIIIKIPVVC WWSKTTSHAA ELTAGFYNPQ NRDGYHGIFK  540
MLKKHSVTMK FVCPDSQIIE DNEALADSEG LRLQVIINSA WDQGLTIAAQ NGCRMLDLKR  600
TLEIAKPMDD PDHRHLSFFA YQQPLNAISQ TTDMRLSILE YFVKSMHGIM NHHHNHI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1v3i_A	1e-107	222	655	11	450	Beta-amylase
1wdq_A	1e-107	222	655	11	450	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270680.1	0.0	PREDICTED: beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0K9PI68	0.0	A0A0K9PI68_ZOSMR; Beta-amylase
STRING	XP_010275178.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2141	36	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Zosma234g00180.1

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]