PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma22g01000.1 | ||||||||
Common Name | ZOSMA_22G01000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26598.1 Da PI: 6.6063 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1e-08 | 109 | 151 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR+ri +++ Lr+l+P +++ a++L +A++Y+k L Zosma22g01000.1 109 IAARHRRERISERIRILRRLVPGG-----SRMNTASMLDEAIQYVKFL 151 56799*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.754 | 102 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-13 | 107 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-13 | 107 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-12 | 108 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-6 | 110 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.69E-5 | 125 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGNYHYHYQN ILHEHMISDY SVEFLPPNTL AGIHAGDGGC CSIEELGEEM NEKRKKKKVE 60 EKEVEEEKLG EMKEMMYKIA VMQPVDIDPS TIKKPKRRNV RISNDPQSIA ARHRRERISE 120 RIRILRRLVP GGSRMNTASM LDEAIQYVKF LKRRVRELES SSSSSTATAT ATASSSYSPI 180 TGTQLQAHLE EGNGEDWLTR PPIDRGMFSS SLFVEAIDDG LGFCFTDDHH QIIL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022950638.1 | 5e-52 | transcription factor IND-like | ||||
TrEMBL | A0A0K9PKN6 | 1e-174 | A0A0K9PKN6_ZOSMR; Uncharacterized protein | ||||
STRING | GLYMA08G16570.2 | 3e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 4e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma22g01000.1 |