PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma22g00870.1 | ||||||||
Common Name | ZOSMA_22G00870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GRAS | ||||||||
Protein Properties | Length: 567aa MW: 63505.3 Da PI: 4.8794 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 407.7 | 1.1e-124 | 196 | 566 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL++cA a+s+g+ e+++a+++++++l+s +gdp qRlaa+++e+La+ +s++ +ykal+++e + +s++l+a+++++e++P+++f+ Zosma22g00870.1 196 KQLLFHCASAFSEGNYEEVSAFITEIRQLVSIHGDPSQRLAACLVEGLASSFESSGKDIYKALSCKEPP---TSDRLSAMQILFEACPCFNFGI 286 589*****************************************************************9...9********************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 +aN aI ea+e e++vHiiDfdi+qG+Q+++Llq L++R+++ ++RiT+v++pes+ s l +g+rL+k+Ae l++ fef + +a+++e Zosma22g00870.1 287 TAANGAITEALEDEKKVHIIDFDINQGAQYVTLLQDLSKRTKQLLRVRITAVDDPESVqrSIGGLTMIGKRLEKVAEDLHIAFEFVP-IASKTE 379 ********************************************************9988899************************.7***** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 d+++ +L+++++Eal+Vn++++lh+++desvs++++rd++L++vk+l+Pk+v+++eq++++n+++F rf+e +yy a+f+sl+a+lpr+s + Zosma22g00870.1 380 DVTTAMLACRSDEALVVNFAYSLHHMPDESVSVANQRDHLLRMVKGLKPKLVTIIEQDVNTNTAPFYPRFVEVYNYYLAVFESLDATLPRDSLD 473 ********************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++vEr++l+++i n+vaceg++r+er e ++kWr+r+++aGF + p+s+++ + +++ +++ + d y+v+ee g++ +gW+d+ L+s SaW+ Zosma22g00870.1 474 RMNVERHCLAKDIINIVACEGTDRIERYEPAGKWRMRMNMAGFVSSPMSSYVKQAIRAQVKNSYCDRYKVKEEAGTINFGWEDKILISSSAWK 566 ****************************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.005 | 169 | 546 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-122 | 196 | 566 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MAFIRHVDSS PASYYSGRSS SNTPNFSNQV FRSDNSDINQ RQFEILKQNY PNGIPVSLYH 60 HPQHQMSSGV STISYPSNPY VSCFSNGSNN KSQSSFSSIS HQTSGSISDV QTPEIEEPCY 120 SNENDLRCKL QELERELFND DEVNGDFINE CDDMECMDDD WIKPMKNLLL IPPSPTESSS 180 DSNSNPISAG ENRTPKQLLF HCASAFSEGN YEEVSAFITE IRQLVSIHGD PSQRLAACLV 240 EGLASSFESS GKDIYKALSC KEPPTSDRLS AMQILFEACP CFNFGITAAN GAITEALEDE 300 KKVHIIDFDI NQGAQYVTLL QDLSKRTKQL LRVRITAVDD PESVQRSIGG LTMIGKRLEK 360 VAEDLHIAFE FVPIASKTED VTTAMLACRS DEALVVNFAY SLHHMPDESV SVANQRDHLL 420 RMVKGLKPKL VTIIEQDVNT NTAPFYPRFV EVYNYYLAVF ESLDATLPRD SLDRMNVERH 480 CLAKDIINIV ACEGTDRIER YEPAGKWRMR MNMAGFVSSP MSSYVKQAIR AQVKNSYCDR 540 YKVKEEAGTI NFGWEDKILI SSSAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-55 | 201 | 565 | 25 | 378 | Protein SCARECROW |
5b3h_A | 5e-55 | 201 | 565 | 24 | 377 | Protein SCARECROW |
5b3h_D | 5e-55 | 201 | 565 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925930.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_010925931.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_010925932.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_019707392.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_019707393.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_019707394.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_019707395.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_019707396.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0K9PIA2 | 0.0 | A0A0K9PIA2_ZOSMR; GRAS family transcription factor | ||||
STRING | GSMUA_Achr3P02410_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 1e-176 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma22g00870.1 |
Publications ? help Back to Top | |||
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