PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma228g00080.1 | ||||||||
Common Name | ZOSMA_228G00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 125aa MW: 13489.2 Da PI: 7.1262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F ++ L Hi +H Zosma228g00080.1 51 FECSSCKRVFDSHQALGGHIASH 73 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.7E-8 | 50 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.12 | 51 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MNYEIVVAFD NTKGKGKEII LVSSLSSSKP ASPPLPLTLA LVGASGDGSV FECSSCKRVF 60 DSHQALGGHI ASHKNIHGCY TSEKNDQPQE DSDLLRRSSV VERILQTALG GHMQWHGIWR 120 ETNI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028768115.1 | 1e-13 | zinc finger protein ZAT3-like | ||||
Refseq | XP_028778710.1 | 1e-13 | zinc finger protein ZAT3-like | ||||
TrEMBL | A0A0K9PIU4 | 2e-87 | A0A0K9PIU4_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 2e-11 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma228g00080.1 |