PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma223g00280.1
Common NameZOSMA_223G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 447aa    MW: 48082.5 Da    PI: 7.422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma223g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.94.8e-106587426
                      ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                      + C f++r G+C yG++C+++H+
  Zosma223g00280.1 65 PDCIFYLRHGICGYGNSCRYNHP 87
                      79********************9 PP
2zf-CCCH29.81e-09106130327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++f+rtGtC+yG +Ck++H++
  Zosma223g00280.1 106 QPDCQHFLRTGTCRYGYTCKYNHPK 130
                       789********************96 PP
3zf-CCCH322.1e-10151175327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C++++rtG+Ck+G  CkF+H++
  Zosma223g00280.1 151 EKSCSYYMRTGYCKFGFACKFNHPQ 175
                       667********************97 PP
4zf-CCCH382.8e-12292317227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C++++++G CkyG++Ck++H++
  Zosma223g00280.1 292 DQPDCQYYMKNGSCKYGSTCKYHHPR 317
                       6899********************96 PP
5zf-CCCH23.87.8e-08337363127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C f+  +G CkyG  CkF H+p
  Zosma223g00280.1 337 PGQAICTFYGTYGSCKYGLGCKFDHPP 363
                       5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5546189IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-46188IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-86587IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-56689IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145103131IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5103130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5108131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619148176IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027148175IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8150175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6150176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4153174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.098290318IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6290317IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5296317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5335361IPR000571Zinc finger, CCCH-type
SMARTSM003560.0073336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131336364IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5338363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPGSIAVSGC SDAAVDKLQE SVLNIKIEEN SHEGNGTEED PSRSNNNSGL DKVAVEATQN  60
GRSVPDCIFY LRHGICGYGN SCRYNHPTNP GQEHLPLGEL PERIGQPDCQ HFLRTGTCRY  120
GYTCKYNHPK NVLDEGNATF NFYGLPLRQG EKSCSYYMRT GYCKFGFACK FNHPQPSAAP  180
GTAFSLPGSP AFASIGPSMT SPSGHPLMGG IPAWLPRPYL SNPQINGFPS YLPYVFPSSH  240
GIIPAHPGWN TYTTPISSVS STNTVGTTGQ ISNPSQISFG PNAQFHFPER PDQPDCQYYM  300
KNGSCKYGST CKYHHPRDRI NSAAACTIGP FGLPMRPGQA ICTFYGTYGS CKYGLGCKFD  360
HPPMGGYYNY ALPQISDPSV NLSSQKCFPA VWIPSDAGSS KTSKVTADVV PSSAPASIIV  420
DTNLSDKAPP NSSTQNSSET PQDKSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJ910.0A0A0K9PJ91_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.27e-76C3H family protein