PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma223g00250.1 | ||||||||
Common Name | ZOSMA_223G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25172.2 Da PI: 9.5947 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f++ae+Aa+a++ a+++l+g Zosma223g00250.1 26 KYRGVRKRP-WGRYAAEIRDPTK---KTRVWLGTFDSAEDAARAYDSAARALRG 75 8********.**********864...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.551 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-13 | 26 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 26 | 84 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.35E-32 | 26 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRKGSRGVAA PVAVAALENG SIESVKYRGV RKRPWGRYAA EIRDPTKKTR VWLGTFDSAE 60 DAARAYDSAA RALRGFKAKT NFPLPSPLHN PPITLPLPNY QHRTCQFSST SPSFPKQSVK 120 TTLLRPATSS HSSTVESSCG PQPRQISGFP CAKERHHQPP RLLTEEDADG FHSDCGSSSS 180 VVDDDDGDVA SVYRKQQQPR KTLPFAFDLN FPPLPDDDLY YQSTALRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-22 | 1 | 83 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020694474.1 | 7e-49 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0K9PIX6 | 1e-167 | A0A0K9PIX6_ZOSMR; Putative Ethylene-responsive transcription factor | ||||
STRING | fgenesh2_kg.1__4150__AT1G50640.1 | 4e-44 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 9e-26 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma223g00250.1 |