PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma21g00910.1
Common NameZOSMA_21G00910
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 265aa    MW: 29368.9 Da    PI: 9.7108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma21g00910.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.44.2e-2616103184
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f k+ tpsdv+k+++lv+pk+ ae++    ++k+ ++  l ++d++g+ W ++++y+++s++yv+tkGW +Fvk+++L +gD+v F +
  Zosma21g00910.1  16 FNKIVTPSDVGKLKWLVIPKQLAEKYlpvvSSKNDKGLLLNFQDRNGKPWIFRYSYWNSSQTYVMTKGWIRFVKEKQLSAGDTVSFGR 103
                      889***************************666678899***********************************************83 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-357126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-2614103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-2314101No hitNo description
SMARTSM010197.2E-1516122IPR003340B3 DNA binding domain
PfamPF023623.7E-2316103IPR003340B3 DNA binding domain
PROSITE profilePS5086313.0716119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEFAATQDMR SMEHMFNKIV TPSDVGKLKW LVIPKQLAEK YLPVVSSKND KGLLLNFQDR  60
NGKPWIFRYS YWNSSQTYVM TKGWIRFVKE KQLSAGDTVS FGRGVGGQAA RDLLYIDWNR  120
GPETRTTTPT SRQLQTTYIN SMPVLEPWND HLRQIQTPHR PYNVNNGCGY GYSNTNSFLY  180
FASSVAGASP THSNLGTGVR EDAIVFESAP SSKNITKFVR LFGVNLDCPS SSSSSSSTPA  240
VSLQLSLGDS GTSTSGAWYD RSNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-4991241116B3 domain-containing transcription factor NGA1
5os9_B5e-4991241116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022722210.17e-66B3 domain-containing transcription factor NGA1-like
SwissprotQ6EU302e-58Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0K9PLZ70.0A0A0K9PLZ7_ZOSMR; Auxin response factor 12
STRINGXP_008783755.11e-61(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.18e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]