PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma21g00640.1 | ||||||||
Common Name | ZOSMA_21G00640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 245aa MW: 27684.3 Da PI: 9.538 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 57 | 110 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Zosma21g00640.1 57 PRLRWTSDLHMSFVNAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 110 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-29 | 53 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.637 | 53 | 113 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-14 | 56 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-23 | 57 | 112 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-8 | 58 | 109 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRGSGEKQEE EKEEVTVLLR PNKKPCLLDL NSGEEEHGGG ITSKGSRVRQ YIRSKIPRLR 60 WTSDLHMSFV NAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDDSGQEK 120 PAEITVSDII HNSRSLFSDI LYCRTTATTA SCFPPSFRMA GNHGVLSSGS RSYDYSQLLQ 180 FPSSTHQTFD LQRPSVSTPY GIFNQRKDAL FGWPWQTHLI SSSLQGHPSR YQMPFSLEVS 240 EFQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-17 | 58 | 112 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 58 | 112 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 58 | 112 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 58 | 112 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925633.1 | 2e-40 | uncharacterized protein LOC105048124 isoform X2 | ||||
Refseq | XP_028557319.1 | 2e-40 | uncharacterized protein LOC110104535 isoform X2 | ||||
TrEMBL | A0A0K9PLW1 | 0.0 | A0A0K9PLW1_ZOSMR; Uncharacterized protein | ||||
STRING | XP_008781403.1 | 4e-41 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-38 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma21g00640.1 |