PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma218g00060.1 | ||||||||
Common Name | ZOSMA_218G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NF-YC | ||||||||
Protein Properties | Length: 89aa MW: 10284.9 Da PI: 9.3162 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.7 | 1.5e-19 | 6 | 70 | 8 | 71 |
NF-YC 8 kqiekatdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkr 71 ++iek+ dfkn+++ l +ikki+ +d dv +mi e+P+++ + celfil+ t +sw +ee + Zosma218g00060.1 6 QEIEKKMDFKNNSFSLKKIKKIITSDGDVdHMINREVPIIFVRVCELFILKHTQQSWSYTEERTN 70 679**************************669*****************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.7E-15 | 10 | 73 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 7.81E-8 | 10 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-6 | 20 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MVNETQEIEK KMDFKNNSFS LKKIKKIITS DGDVDHMINR EVPIIFVRVC ELFILKHTQQ 60 SWSYTEERTN GKLSGGTMLR LSHRPLTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-17 | 6 | 67 | 5 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284851.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5 | ||||
Refseq | XP_007030882.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030884.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030888.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_007030889.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_008450660.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_010659833.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 isoform X5 | ||||
Refseq | XP_011659897.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_011659898.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_016900989.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_017977847.1 | 2e-17 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_018843712.1 | 1e-17 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_018858164.1 | 9e-18 | PREDICTED: nuclear transcription factor Y subunit C-9-like, partial | ||||
Refseq | XP_021283355.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283357.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283358.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283359.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283360.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283361.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_021283362.1 | 2e-17 | nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 3e-17 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0K9PM35 | 5e-59 | A0A0K9PM35_ZOSMR; Uncharacterized protein | ||||
STRING | Aquca_017_00420.1 | 8e-17 | (Aquilegia coerulea) | ||||
STRING | VIT_14s0128g00250.t01 | 7e-17 | (Vitis vinifera) | ||||
STRING | EOY11389 | 8e-17 | (Theobroma cacao) | ||||
STRING | XP_008450660.1 | 7e-17 | (Cucumis melo) | ||||
STRING | XP_004157253.1 | 7e-17 | (Cucumis sativus) | ||||
STRING | POPTR_0008s20780.1 | 6e-17 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 1e-19 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Zosma218g00060.1 |