PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma217g00110.1 | ||||||||
Common Name | ZOSMA_217G00110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | SBP | ||||||||
Protein Properties | Length: 155aa MW: 18417 Da PI: 7.145 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 39 | 2.1e-12 | 6 | 33 | 49 | 76 |
EEETTT--SS--S-STTTT-------S- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkk 76 fh l++fDe+k+sCrr+L++hn+rrr+ Zosma217g00110.1 6 FHILKDFDEGKHSCRRKLEHHNKRRRRG 33 9*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.434 | 1 | 33 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-9 | 6 | 34 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-7 | 6 | 32 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MIDGFFHILK DFDEGKHSCR RKLEHHNKRR RRGPNADQKV LDEKENNSIE IIHIEEVVQD 60 DEQSKGRMSF KLYDWNPADF PRRLRRQIFQ WLDKEGMMYD NTLFQILQDG TSLVNVKMEV 120 QVPKLHYVYP VLFEAGKSIE IFACGSNLFQ PNFW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 31 | RRKLEHHNKRRRR |
2 | 20 | 31 | RKLEHHNKRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021635653.1 | 6e-38 | squamosa promoter-binding-like protein 7 isoform X7 | ||||
Swissprot | Q6I576 | 2e-25 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A0K9PK25 | 1e-112 | A0A0K9PK25_ZOSMR; Uncharacterized protein | ||||
STRING | XP_010666331.1 | 4e-34 | (Beta vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 3e-24 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Zosma217g00110.1 |
Publications ? help Back to Top | |||
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