PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma217g00090.1 | ||||||||
Common Name | ZOSMA_217G00090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | SBP | ||||||||
Protein Properties | Length: 111aa MW: 12939.7 Da PI: 7.7304 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 35.2 | 3.2e-11 | 5 | 32 | 49 | 76 |
EEETTT--SS--S-STTTT-------S- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkk 76 fh l++fDe+krs rr+L++hn+rrr+ Zosma217g00090.1 5 FHILKDFDEGKRSRRRKLEHHNKRRRRG 32 9*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.024 | 1 | 32 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.5E-5 | 4 | 31 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-8 | 4 | 33 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MSGFFHILKD FDEGKRSRRR KLEHHNKRRR RGPNADQKVL DEKENNSIEI IHIEEVVQDD 60 EQSKDGTSLV NVKMEVQVPK LHYVYPVLFE AGKSIEIFAC GSNLFQPNFW * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 30 | RRKLEHHNKRRRR |
2 | 19 | 30 | RKLEHHNKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PK32 | 5e-76 | A0A0K9PK32_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 4e-12 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Zosma217g00090.1 |