PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma215g00430.1 | ||||||||
Common Name | ZOSMA_215G00430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26532.8 Da PI: 7.9437 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.9 | 4e-19 | 52 | 141 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA ++GF+v + ++k + ++e++ r+f Csk+g++ +++++ +e+++r+ ++r gC a++ +++++ + w+v ++ ++HnH+++ Zosma215g00430.1 52 YMGYAGNIGFNVHMGSTKMN--DHEMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsTRLWRVVNFIEDHNHPMV 141 99*************98887..9999************998888777777777788899************99899*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.3E-17 | 52 | 141 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MHISTEQLQS HNVDQDNIHS EPNTETIGSS STPYIPEVGQ QFNSHDEAGD AYMGYAGNIG 60 FNVHMGSTKM NDHEMVGRRF LCSKQGYALS TDTANNVNER KHRRIRNSRS GCLAMIYISL 120 DRSTRLWRVV NFIEDHNHPM VTPSKRRYLP VNRVITPLSR ALFKSLNTSN ISPSDQYCVA 180 AQEAGGFDHM QYTPSDLSNM RCDDRCNIIQ RDADLLNYFK KKDKIIGLLL LVY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PK21 | 1e-176 | A0A0K9PK21_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-18 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma215g00430.1 |