PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00440.1
Common NameZOSMA_214G00440
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 274aa    MW: 30365.2 Da    PI: 8.1251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13127171347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
  Zosma214g00440.1 127 PWTEEEHKLFLVGLSKFGKGDWRSISRNYVISRTPTQVASHAQKY 171
                       8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.3081376IPR017877Myb-like domain
SMARTSM007173.5E-61778IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-52082IPR009057Homeodomain-like
CDDcd001675.00E-62076No hitNo description
PROSITE profilePS5129417.53119176IPR017930Myb domain
SuperFamilySSF466891.52E-16122177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-11124170IPR009057Homeodomain-like
SMARTSM007171.6E-11124174IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.9E-16124174IPR006447Myb domain, plants
CDDcd001675.72E-10127172No hitNo description
PfamPF002496.6E-12127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSPPMQEEK ATSSSPGRLE WTREEEKTFE TALADIMPWT SEQDSSSPED NRFEKVAQKV  60
GTKTIEEVKR HYDTLVDDIR AIEAGRIPIP CYVGENNQGK EKEKGVDRCV GRSGPSKIDP  120
ERRKGTPWTE EEHKLFLVGL SKFGKGDWRS ISRNYVISRT PTQVASHAQK YFIRLNSMNR  180
DRRRSSIHDI TSVNGGEAAS PQAPIGSSVN HPPPHQGVYG LPVGQPLTGH MVSAVGTPVM  240
LPPGHVPYVV PMAYPITPPP PAMHHHRYTP CQD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.17e-98transcription factor MYBS1
SwissprotB8A9B22e-80MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH592e-80MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A0K9PKF90.0A0A0K9PKF9_ZOSMR; Myb family transcription factor
STRINGXP_010265272.18e-93(Nelumbo nucifera)
STRINGGSMUA_Achr9P21870_0017e-93(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-70MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]