PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00340.1
Common NameZOSMA_214G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 244aa    MW: 27942.2 Da    PI: 6.8742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-172370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++lv+++  +G g W+  ar  g++Rt+k+c++rw++yl
  Zosma214g00340.1 23 KGPWTMEEDLILVNYISTHGEGVWNNLARSAGLKRTGKSCRLRWLNYL 70
                      79********************************************97 PP
2Myb_DNA-binding54.33.1e-1776119146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE +l+vd+ +++G++ W++Ia+ m+ gRt++++k++w++
  Zosma214g00340.1  76 RGNITPEEKLLIVDLQARWGNR-WSKIAKQMP-GRTDNEIKNYWRT 119
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5841870IPR017930Myb domain
SuperFamilySSF466891.98E-2921117IPR009057Homeodomain-like
SMARTSM007177.1E-132272IPR001005SANT/Myb domain
PfamPF002492.5E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-222477IPR009057Homeodomain-like
CDDcd001671.35E-102570No hitNo description
PROSITE profilePS5129424.5671125IPR017930Myb domain
SMARTSM007173.0E-1475123IPR001005SANT/Myb domain
PfamPF002499.1E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2378126IPR009057Homeodomain-like
CDDcd001671.18E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTCSSDSTDQ LQHLQEQDCE VRKGPWTMEE DLILVNYIST HGEGVWNNLA RSAGLKRTGK  60
SCRLRWLNYL RPDIRRGNIT PEEKLLIVDL QARWGNRWSK IAKQMPGRTD NEIKNYWRTR  120
IQRKVKQPRD VGYNNNAYHQ APDGLQKYSN YQNSIVDYPP KPSMLTLLTD EGSTSQTRTI  180
DGEMLIPCTP LFAESGTTHH HQQQLGFPDQ NSSLDQSNDG LWGVDDLWSM HLFNNVDLAN  240
LPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028078430.18e-75myb-related protein 305
SwissprotP813911e-72MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0K9PKE70.0A0A0K9PKE7_ZOSMR; Uncharacterized protein
STRINGPGSC0003DMT4000012782e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-71myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]