PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma214g00080.1 | ||||||||
Common Name | ZOSMA_214G00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | AP2 | ||||||||
Protein Properties | Length: 579aa MW: 63651 Da PI: 6.2499 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 209 | 258 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Zosma214g00080.1 209 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTANAAARAYDRAAIKFRG 258 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.8 | 5.3e-13 | 301 | 349 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s+y+GV+ +k grW+A+ + +k+++lg f t+ eAa+a+++a+ k Zosma214g00080.1 301 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFETEAEAARAYDKAAIKT 349 89********.7******5553..2.26**********99*********9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-15 | 209 | 267 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-9 | 209 | 258 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.635 | 210 | 266 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.97E-11 | 210 | 265 | No hit | No description |
SMART | SM00380 | 6.8E-31 | 210 | 272 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-17 | 210 | 266 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 301 | 361 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-9 | 301 | 348 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.11E-23 | 301 | 361 | No hit | No description |
PROSITE profile | PS51032 | 15.857 | 302 | 359 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-29 | 302 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-16 | 302 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 303 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-5 | 341 | 361 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MWDLNAPVDQ RREEEDAEMS CVRQNSNIFT AAEKGNGASG SPASMATENE DSESSAVVIE 60 ASEDARDDEE EEEGAEENTA AFALSGIGKR GGGGGCKKIF GFSIANEDDE ERPLSGETGD 120 PVIVTHQFFP VDNYLGEMGS SKQAKVVTGC GSSSRNTSNG QLPQAHWVGV KFCHDGGNEG 180 GKKAATPAVE VSVSQPIKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 240 TANAAARAYD RAAIKFRGVE ADINFSLDDY EDDLKKMGDL TKEEFVHVLR RQSTGFPRGS 300 SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFETEAEAAR AYDKAAIKTS GKDAVTNFDP 360 SIYENELNSA GSSNTDHDLV LSLGASGSKT SYTTKSTDQI TSTPFQMDWG WNFQSNPSSK 420 YEDKRKLVEE ETRRNYPYFQ SPNPIKQNET TLDYQQQSRR AGDAAIFQII PQHFIPPNYH 480 HQRPSGSGEG GLLSLAIGDE QGQTNAYHIQ QHQQLQHLPR QPVWRNNWPT PTAGGSLPHL 540 PPMFATAAAA SSGFPSQTAP PPNWLQKNGF HSNIMRPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267881.1 | 1e-146 | transcription factor APETALA2 | ||||
Refseq | XP_010652782.1 | 1e-146 | PREDICTED: transcription factor APETALA2 isoform X1 | ||||
Swissprot | P47927 | 1e-113 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0K9PMF5 | 0.0 | A0A0K9PMF5_ZOSMR; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-104 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma214g00080.1 |