PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma213g00150.1 | ||||||||
Common Name | ZOSMA_213G00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 187aa MW: 21428 Da PI: 9.8482 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.6 | 1.2e-14 | 3 | 86 | 12 | 90 |
FAR1 12 Fsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Fsvr +++++ + ++ ++r++ Cske + + + +rr++a++r+gC a++k+k++ +++w v++++leHnH+l+ Zosma213g00150.1 3 FSVRLGSTNYKtskeDGKKFLVMRRLLCSKEEIVDLLHPPKLGKRRKNAVSRCGCCASIKIKRKAmSEVWIVKNIVLEHNHPLT 86 77777655444343234455789*********99998888899**********************9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-11 | 3 | 86 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSFSVRLGST NYKTSKEDGK KFLVMRRLLC SKEEIVDLLH PPKLGKRRKN AVSRCGCCAS 60 IKIKRKAMSE VWIVKNIVLE HNHPLTTPSK VWFLSINRSI SSTSILLFQS LSEVNVSVSQ 120 QTAYFSTQVS VIEHMKYTQL DISNMCRDDR VDMKNYDVDL LVEEFEMKKS AQPDFFIPLS 180 KIRMVD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 47 | PKLGKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PKI8 | 1e-135 | A0A0K9PKI8_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma213g00150.1 |