PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g01250.1
Common NameZOSMA_20G01250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 373aa    MW: 39431.6 Da    PI: 8.1736
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g01250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.9e-3950184289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R+sa caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++  + s + s+s+ s++      
  Zosma20g01250.1  50 PPKRTSTKDRHTKVDGRGRRIRMSAICAARVFQLTRELGHKSDGETIEWLLQQAEPAVVAATGTGTIPANFTsLNISLRGSGSTMSAPsqlcnt 143
                      789*************************************************************999998887666666666644444566666 PP

              TCP  89 ........................................k 89 
                                                              +
  Zosma20g01250.1 144 yfnaclasqlpvrlrnesvdrqtgcystdstsvsmgllnfH 184
                      77666666666666666555555555555555555433330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3954223IPR005333Transcription factor, TCP
PROSITE profilePS5136927.43556110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEGDGGGGGG GRKPTFPLQL LEKKVEEKDA HESSIPRGGE SSGEQSKKPP PKRTSTKDRH  60
TKVDGRGRRI RMSAICAARV FQLTRELGHK SDGETIEWLL QQAEPAVVAA TGTGTIPANF  120
TSLNISLRGS GSTMSAPSQL CNTYFNACLA SQLPVRLRNE SVDRQTGCYS TDSTSVSMGL  180
LNFHSASTPT AHSLQPFLNI SDDDTEKSIC KRQHREQADS AHQLQQQTQM AGYSLTAAQG  240
QIPGGLWMVT NNPNMASTTT SQPIVGGFGG SGDGSSIWTF PSIGNTTTIL RGDVPTTGGG  300
LHFMNFPTPM ALLPPSQQLD LSSGGSSSHH QLRSGAGGVC SDHNRIAPTG SRQQHQGHGG  360
RSDNRYDTST GD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258392.18e-89PREDICTED: transcription factor TCP14
TrEMBLA0A0K9PN640.0A0A0K9PN64_ZOSMR; TCP transcription factor 17
STRINGXP_010258392.13e-88(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.12e-48TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14