PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma20g01250.1 | ||||||||
Common Name | ZOSMA_20G01250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | TCP | ||||||||
Protein Properties | Length: 373aa MW: 39431.6 Da PI: 8.1736 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 4.9e-39 | 50 | 184 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R+sa caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s + s+s+ s++ Zosma20g01250.1 50 PPKRTSTKDRHTKVDGRGRRIRMSAICAARVFQLTRELGHKSDGETIEWLLQQAEPAVVAATGTGTIPANFTsLNISLRGSGSTMSAPsqlcnt 143 789*************************************************************999998887666666666644444566666 PP TCP 89 ........................................k 89 + Zosma20g01250.1 144 yfnaclasqlpvrlrnesvdrqtgcystdstsvsmgllnfH 184 77666666666666666555555555555555555433330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-39 | 54 | 223 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.435 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MEGDGGGGGG GRKPTFPLQL LEKKVEEKDA HESSIPRGGE SSGEQSKKPP PKRTSTKDRH 60 TKVDGRGRRI RMSAICAARV FQLTRELGHK SDGETIEWLL QQAEPAVVAA TGTGTIPANF 120 TSLNISLRGS GSTMSAPSQL CNTYFNACLA SQLPVRLRNE SVDRQTGCYS TDSTSVSMGL 180 LNFHSASTPT AHSLQPFLNI SDDDTEKSIC KRQHREQADS AHQLQQQTQM AGYSLTAAQG 240 QIPGGLWMVT NNPNMASTTT SQPIVGGFGG SGDGSSIWTF PSIGNTTTIL RGDVPTTGGG 300 LHFMNFPTPM ALLPPSQQLD LSSGGSSSHH QLRSGAGGVC SDHNRIAPTG SRQQHQGHGG 360 RSDNRYDTST GD* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258392.1 | 8e-89 | PREDICTED: transcription factor TCP14 | ||||
TrEMBL | A0A0K9PN64 | 0.0 | A0A0K9PN64_ZOSMR; TCP transcription factor 17 | ||||
STRING | XP_010258392.1 | 3e-88 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 2e-48 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | Zosma20g01250.1 |