PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma205g00330.1

Common Name

ZOSMA_205G00330

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 318aa MW: 34677.1 Da PI: 4.5249

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma205g00330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	141.7	1.9e-44	42	132	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +drflPianvsrimk++lP nakisk+aket+qecvsef+s++t+eas+kc+rekrktingddllw++ l f+ y plk kyre eg Zosma205g00330.1 42 SNDRFLPIANVSRIMKRALPLNAKISKEAKETLQECVSEFVSYITGEASEKCHREKRKTINGDDLLWSMNRLDFDAYTIPLK----KYRESEG 130 68***************************************************************************99976....6777777 PP NF-YB 96 ek 97 e+ Zosma205g00330.1 131 ER 132 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-43	41	146	IPR009072	Histone-fold
SuperFamily	SSF47113	3.44E-34	43	156	IPR009072	Histone-fold
Pfam	PF00808	7.9E-25	46	110	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.4E-13	74	92	No hit	No description
PRINTS	PR00615	6.4E-13	93	111	No hit	No description
PRINTS	PR00615	6.4E-13	112	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAESGETSEG LNNGIEGSSV TNNPTIATGI TSNSNPGRDA SSNDRFLPIA NVSRIMKRAL 60 PLNAKISKEA KETLQECVSE FVSYITGEAS EKCHREKRKT INGDDLLWSM NRLDFDAYTI 120 PLKKYRESEG ERSNISPSHQ TQQQRQPPIA QQPQNKRMCM DINDASSSGA GLGIDNDIYA 180 IPTGRNCNDY GNGYTGIMDP TAHYTYPTVG GTNYSISNVV GGNYNMSESS LYGGLDPRIY 240 RSNNEVGSLT NGEERFPTIR EGFDNRTEEA GDLMAMFSSK IDEANENDGM GGDISSAIYQ 300 NYLYPDTLPP QLPSPGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-34	44	127	5	92	Transcription factor HapC (Eurofung)
4g92_B	2e-34	44	127	5	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PLK3	0.0	A0A0K9PLK3_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	7e-47	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma205g00330.1