PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma203g00180.1
Common NameZOSMA_203G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 290aa    MW: 31990.9 Da    PI: 7.5423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma203g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.1e-18108162256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++++q  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Zosma203g00180.1 108 RKKLRLSRNQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 162
                       788899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-40108197191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rls++q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Zosma203g00180.1 108 RKKLRLSRNQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLHKEVQELR-AL 197
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-121390IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.9E-1890162IPR009057Homeodomain-like
SuperFamilySSF466893.04E-1899165IPR009057Homeodomain-like
PROSITE profilePS5007117.281104164IPR001356Homeobox domain
SMARTSM003898.2E-16106168IPR001356Homeobox domain
CDDcd000862.78E-15108165No hitNo description
PfamPF000462.4E-15108162IPR001356Homeobox domain
PROSITE patternPS000270139162IPR017970Homeobox, conserved site
SMARTSM003403.6E-27164207IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-11164198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009826Biological Processunidimensional cell growth
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MENLGLSLSI SAPPSIANNH PSEPLPLWPV FVPPSSAVGM EMPLLKRFDV NRAPTVEKEI  60
EEEEEDEYAG VSSANSTVSS VSAGKRGQRE GSENGPISEE EDGGEGSRKK LRLSRNQSAV  120
LEESFKEHNT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCCENL  180
TEENRRLHKE VQELRALKLS PQFYMQMAPP TTLTMCPSCE RVAVSSSSSS SASSASTVAT  240
ANPSQNPDAH LHFAGSSGTK HQYAQGLQKP QQHLFFPMPV ESPARRSVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112SRKKLRL
2156164RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00550DAPTransfer from AT5G47370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605768.12e-94homeobox-leucine zipper protein HAT4
SwissprotP466003e-81HAT1_ARATH; Homeobox-leucine zipper protein HAT1
SwissprotP466013e-81HAT2_ARATH; Homeobox-leucine zipper protein HAT2
SwissprotP466024e-81HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0K9PLP00.0A0A0K9PLP0_ZOSMR; Homeobox-leucine zipper protein
STRINGcassava4.1_013177m7e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-61homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]
  5. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]