PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma202g00360.1
Common NameZOSMA_202G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 683aa    MW: 76133 Da    PI: 8.4025
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma202g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23123224199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Zosma202g00360.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVDPPVQ--TVLARDVHGEQWKFRHIYRGTPRRHLLTTGWSTFVNQKKLMAGDSIVFL--R 211
                       89****************************985434444..8************************************************..3 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        ++ el+v+++r+
  Zosma202g00360.1 212 AENDELRVGIRRA 224
                       488889****996 PP
2Auxin_resp111.86.6e-37298380182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                       +a+ a+t+++F++vY+Pr+st+eF+vkv+ v++a ++++++GmRfkmafetedss++++ +Gt++gv+ +dp+rWp+S+Wr L
  Zosma202g00360.1 298 VANLAATGQPFDIVYYPRTSTPEFCVKVSAVKAANRIQWTPGMRFKMAFETEDSSRISWfMGTISGVQFADPIRWPHSPWRIL 380
                       6899*****************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-30120250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-36120233IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-20122223No hitNo description
PfamPF023621.4E-21123224IPR003340B3 DNA binding domain
SMARTSM010197.9E-22123225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098123225IPR003340B3 DNA binding domain
PfamPF065073.8E-32298380IPR010525Auxin response factor
PROSITE profilePS5174515.496602679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MKHQQQQPEK QVLDARLWHA CAGGLVQIPP VNSRVCYFPQ GHAEHALGNV DFGMGTRIPA  60
LVLCKVTNIN YMADPNTDEV FVKIRLLPVK SNGLDFDDNN NEEEGEENNG GVEDLLPEKL  120
SSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSVDPPV QTVLARDVHG EQWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LMAGDSIVFL RAENDELRVG IRRAKREIGE ESSDAALSRW  240
NIPTTGNTTY IPFHQYGRFS VFTREEESSL TRKNSVEDVN HVRGRVRVRI RAESVVEVAN  300
LAATGQPFDI VYYPRTSTPE FCVKVSAVKA ANRIQWTPGM RFKMAFETED SSRISWFMGT  360
ISGVQFADPI RWPHSPWRIL VVAWDEPDIL QNVKRVNPWL VELISNLPPI PLSPFSPPRK  420
KLRVPQPFPD LSFARQQQQF PPPVFAGNYN NPLGSCSNPP AGIQGARHTR FGISLSDLHS  480
SSIFTRQFVN STPRISTGGL VIGNHNFRHR RSGPDNVSCL LTMGNSNWSP EKNGKSSPSP  540
PSSSSSFLLF GKTIQTEKQI SSGNYGEFSP VGNRNSWSDC TCPPASLLKD HHEFSELSLG  600
NSGMCKVFME SENMGRSLDV SVLDSYDELR AKLAEMFGSD TKAQLLYRDS TGAVRVAGEE  660
PLIEFKKSAR RVTILMDSGT GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-771240218353Auxin response factor 1
4ldy_B2e-771240218353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253698.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0K9PLV80.0A0A0K9PLV8_ZOSMR; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]