PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma200g00210.1
Common NameZOSMA_200G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 291aa    MW: 32539 Da    PI: 4.5554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma200g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+lv +++  G g+W++ ++  g+ R++k+c++rw +yl
  Zosma200g00210.1 14 KGKWTAEEDEKLVSYIRHNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eE+  ++++ ++lG++ W++Ia+ ++ gRt++++k++w+++l
  Zosma200g00210.1  67 RGNISPEEESTIIKLQAELGNR-WSLIANSLP-GRTDNEIKNHWNSHL 112
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.992961IPR017930Myb domain
SuperFamilySSF466891.8E-2811108IPR009057Homeodomain-like
SMARTSM007176.4E-121363IPR001005SANT/Myb domain
PfamPF002493.1E-151461IPR001005SANT/Myb domain
CDDcd001672.62E-91661No hitNo description
PROSITE profilePS5129425.22362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2465116IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
CDDcd001671.48E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCDKI GMKKGKWTAE EDEKLVSYIR HNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKDDLKRGNI SPEEESTIIK LQAELGNRWS LIANSLPGRT DNEIKNHWNS HLSRRIQSEM  120
NKGAPPVKKK RGRKPKPKPT KEESGSGSNL KQMESQSETT KETEVTLTST SSEGSTDKVL  180
ERTCSGEDGL GVIDFDIEDF NLEDLWDDVD NNTNITIDNN NNSSSYNIEN DDLWWPPVLP  240
QIASANSLVG LDDTILDQPM SGIESACQWE DDVDFNQWLD TDFGAGALFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121185110B-MYB
1h8a_C6e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PM100.0A0A0K9PM10_ZOSMR; Transcription repressor MYB4
STRINGXP_008386735.18e-65(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-63myb domain protein 111