PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma200g00190.1 | ||||||||
Common Name | ZOSMA_200G00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 32271.9 Da PI: 4.8426 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.9e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+ +++ G g+W++ +++ g+ R++k+c++rw +yl Zosma200g00190.1 14 KGKWAAEEDAKLISYIRDNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 8.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE+ ++++ ++lG++ W++Ia+ ++ gRt++++k++w+++l Zosma200g00190.1 67 RGNISSEEESTIIRLQAELGNR-WSSIANNLP-GRTDNEIKNHWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.802 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.47E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.60E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.735 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRAPCCDKV GMKKGKWAAE EDAKLISYIR DNGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LKDDLKRGNI SSEEESTIIR LQAELGNRWS SIANNLPGRT DNEIKNHWNS HLRRRIESEM 120 NKDGPPPVKK KRGRKPKPRP TVEKSESREI KSPANSTITN KTESVPSMQQ EGDGVLFLDF 180 DVEKFLMDED LWNDVNTDIH VTDTDSHNNY NNVRDGNELV GSPVPPTAFS AAAEVDGVLN 240 WDDCNLTDLD VLNFEPSGFQ WGDDQDDYLN LDWWLNSDLC SFDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 12 | 118 | 5 | 110 | B-MYB |
1h8a_C | 4e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 131 | RRRIESEMNKDGPPPVKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028553060.1 | 5e-65 | transcription factor MYB111-like | ||||
TrEMBL | A0A0K9PM22 | 0.0 | A0A0K9PM22_ZOSMR; Transcription repressor MYB4 | ||||
STRING | XP_009787226.1 | 4e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-61 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Zosma200g00190.1 |