PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma200g00190.1
Common NameZOSMA_200G00190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 285aa    MW: 32271.9 Da    PI: 4.8426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma200g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W +eEd +l+ +++  G g+W++ +++ g+ R++k+c++rw +yl
  Zosma200g00190.1 14 KGKWAAEEDAKLISYIRDNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP

2Myb_DNA-binding49.68.8e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE+  ++++ ++lG++ W++Ia+ ++ gRt++++k++w+++l
  Zosma200g00190.1  67 RGNISSEEESTIIRLQAELGNR-WSSIANNLP-GRTDNEIKNHWNSHL 112
                       7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.802961IPR017930Myb domain
SuperFamilySSF466895.47E-2611108IPR009057Homeodomain-like
SMARTSM007175.2E-101363IPR001005SANT/Myb domain
PfamPF002496.9E-131461IPR001005SANT/Myb domain
CDDcd001678.60E-81661No hitNo description
PROSITE profilePS5129424.73562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2365116IPR009057Homeodomain-like
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002495.1E-1467112IPR001005SANT/Myb domain
CDDcd001673.14E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKV GMKKGKWAAE EDAKLISYIR DNGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LKDDLKRGNI SSEEESTIIR LQAELGNRWS SIANNLPGRT DNEIKNHWNS HLRRRIESEM  120
NKDGPPPVKK KRGRKPKPRP TVEKSESREI KSPANSTITN KTESVPSMQQ EGDGVLFLDF  180
DVEKFLMDED LWNDVNTDIH VTDTDSHNNY NNVRDGNELV GSPVPPTAFS AAAEVDGVLN  240
WDDCNLTDLD VLNFEPSGFQ WGDDQDDYLN LDWWLNSDLC SFDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23121185110B-MYB
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112131RRRIESEMNKDGPPPVKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028553060.15e-65transcription factor MYB111-like
TrEMBLA0A0K9PM220.0A0A0K9PM22_ZOSMR; Transcription repressor MYB4
STRINGXP_009787226.14e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-61myb domain protein 111