PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g03840.1
Common NameZOSMA_1G03840
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family YABBY
Protein Properties Length: 261aa    MW: 29648.4 Da    PI: 10.6509
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g03840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1081.8e-33982377162
           YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                     ++ +C +  +   t+++v vP + ++++vtv+CGhC+++  ++       ++ +     +  ++ + +l+ +++     + ++ ++s+ +ss   
  Zosma1g03840.1  98 PQSICAMFVATSATLFLVGVPLKRIMETVTVKCGHCSNISFLT------SRPIMP----TNLPDFHMTLGLQTSCH---DFRKGQPSSPTSS--- 176
                     678999999999*************************985532......222222....34566777777665544...4445555555555... PP

           YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                      en  e +p+v++v++PPe++ rvPsaynrf+keeiqrik++ P+i hreafs+aaknWa 
  Zosma1g03840.1 177 VENLAEMTPKVHHVVKPPERKHRVPSAYNRFMKEEIQRIKTAQPNIPHREAFSMAAKNWAK 237
                     346778899999***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-3899237IPR006780YABBY protein
SuperFamilySSF470955.11E-8185238IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4191237IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRLVLFLYVW YVRVFFLLLN LSVRKRWRCV VDEKGSLYKS GGRRDSEGDE WKQLKQLRKK  60
QDITRCEHKY VFKASLFKAS YHQTATQFSS SSFSSWIPQS ICAMFVATSA TLFLVGVPLK  120
RIMETVTVKC GHCSNISFLT SRPIMPTNLP DFHMTLGLQT SCHDFRKGQP SSPTSSVENL  180
AEMTPKVHHV VKPPERKHRV PSAYNRFMKE EIQRIKTAQP NIPHREAFSM AAKNWAKSDT  240
NAPNGSQKSP KAAAAISLHV *
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936439.11e-51protein DROOPING LEAF
SwissprotQ76EJ07e-48YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A0K9PN400.0A0A0K9PN40_ZOSMR; Protein DROOPING LEAF
STRINGTRIUR3_31693-P14e-48(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-42YABBY family protein