PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1g03400.1

Common Name

ZOSMA_1G03400

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 264aa MW: 29544.5 Da PI: 10.5461

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1g03400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	136	189	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+aveqLGG+++AtPk++lelm vk+Ltl+hvkSHLQ+YR+ Zosma1g03400.1 136 PRMRWTSTLHAHFVRAVEQLGGHDRATPKSVLELMTVKDLTLAHVKSHLQMYRT 189 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.45E-16	133	190	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-29	134	190	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-24	136	189	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	137	188	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MMRRNDHEGF SSTCNSTYST DLSLQITPPM IHEETAEQDG NKLLHYKSTT ATLFGLGRSG 60 SVLRKEINNT DDNEPTLSLG LVETNSFTAS PSNYGAASLH RHHHHVRIHH HQPYSADLKK 120 NFRSKLGIHK RSIRAPRMRW TSTLHAHFVR AVEQLGGHDR ATPKSVLELM TVKDLTLAHV 180 KSHLQMYRTV RSTDKAIGQQ QPLRSGEVGG GMPAPSCHKL HHQITTLSYS SRHETNSTSP 240 PSAQRAGRRK VYICVCVRRL LII*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-17	137	191	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	137	191	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	137	191	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	137	191	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	137	191	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896463.1	2e-47	probable transcription factor KAN4
TrEMBL	A0A0K9PMQ9	0.0	A0A0K9PMQ9_ZOSMR; Uncharacterized protein
STRING	evm.model.supercontig_64.19	7e-47	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-39	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma1g03400.1