PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma1g02960.1
Common NameZOSMA_1G02960
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 294aa    MW: 33520.6 Da    PI: 10.068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma1g02960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-175299148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
   Zosma1g02960.1 52 KGSWTKEEDQKLVAYIRVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 99
                     799*****************************99************97 PP
2Myb_DNA-binding50.54.8e-16105149147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E e+++++++++G++ W++Ia +++ gRt++++k++w+++
   Zosma1g02960.1 105 RGNFSVDEIEIIIKLHNLFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 149
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-2344102IPR009057Homeodomain-like
PROSITE profilePS5129416.6884799IPR017930Myb domain
SuperFamilySSF466898.24E-2850146IPR009057Homeodomain-like
SMARTSM007171.0E-1351101IPR001005SANT/Myb domain
PfamPF002496.2E-155299IPR001005SANT/Myb domain
CDDcd001672.83E-105499No hitNo description
PROSITE profilePS5129424.903100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-25103154IPR009057Homeodomain-like
SMARTSM007173.6E-16104152IPR001005SANT/Myb domain
PfamPF002492.5E-14105149IPR001005SANT/Myb domain
CDDcd001671.22E-10107150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MLIISLSKVN DNLNNQQISE RPTYVLINNF THLIVSKRMG RSLCCETVHT NKGSWTKEED  60
QKLVAYIRVH GEGCWRSLPK AAGLLRCGKS CRLRWINYLR PDLKRGNFSV DEIEIIIKLH  120
NLFGNKWSLI AGRLPGRTDN EIKNYWNTHI KRKLLSKGVD PSTHMPLDKK KHTTTTTTTT  180
TTLPKKSYEL SSVWQAQFAS LAAGSSCFKS VDEELNLDLS ISPPVKQQQK YPVKKEMHNE  240
MSELCFSCRL GLRNSKECRC KNITVDDTKK NLIIGYNSSS STLLHYRSRD MNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26521547108B-MYB
1h8a_C5e-26251543128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041863.13e-98PREDICTED: myb-related protein 308
SwissprotP813933e-95MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0K9PMW90.0A0A0K9PMW9_ZOSMR; Uncharacterized protein
STRINGEOX976941e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-82myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]