PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma1g02530.1 | ||||||||
Common Name | ZOSMA_1G02530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 334aa MW: 37644.6 Da PI: 5.2057 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.8 | 2.5e-17 | 10 | 60 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyeys 50 +ie++++r+ tf kR+ gi KKA ELS+LC+++v +i +s ++ +++++ Zosma1g02530.1 10 FIEDERRRKSTFGKRLDGIKKKAMELSTLCGIDVVLICTGSadNNSIQTWP 60 8*************************************9973356788886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.596 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-18 | 1 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.09E-19 | 3 | 84 | No hit | No description |
PRINTS | PR00404 | 1.1E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-16 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MVRKRLPYRF IEDERRRKST FGKRLDGIKK KAMELSTLCG IDVVLICTGS ADNNSIQTWP 60 ENLLEVQNII DRFGRLGIED RDRRKGDLKS HMKNQIKKIS AELNRLRRDN VANGYLMFNY 120 GILLPQGISN TSAVFASLEA KLAAVNERIG VLMDNMKLGN NVDSFCLDDS PITFSHYFED 180 QVGMTGLDEM FNNNCEVGGN GQSSQFVQDV MPLNYIMPQL QQVDHYNNGE GCSTTSTFVD 240 PYCVNYAAQD SEIGFSNSNI ARMISNSTTP ALPPPPYDNQ IISKYNLIGD DYINSDYLPL 300 MWLTMPETTT SSNQIIFHRP QDSPFYPGTP HQM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 17 | RKRLPYRFIEDERRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PMT2 | 0.0 | A0A0K9PMT2_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16694 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65330.1 | 1e-12 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma1g02530.1 |