PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00820.1
Common NameZOSMA_19G00820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 278aa    MW: 31101.1 Da    PI: 9.0741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.2e-103583147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     r  WT  E +++ +  + + ++   +W++Ia++++ g++ +++k ++ ++
  Zosma19g00820.1 35 RPHWTLRENKIFEENLAVHDKEtpdRWHKIAKMLP-GKSVEEVKRHYKNL 83
                     668*****************99*************.***********997 PP

2Myb_DNA-binding45.51.7e-14144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Zosma19g00820.1 144 PWTEEEHRLFLMGLKKYGKGDWRNISRNFVMTRTPTQVASHAQKY 188
                      8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9163386IPR017884SANT domain
SMARTSM007175.0E-113486IPR001005SANT/Myb domain
PfamPF002496.9E-83583IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-53583IPR009057Homeodomain-like
SuperFamilySSF466894.74E-123691IPR009057Homeodomain-like
CDDcd001672.64E-93883No hitNo description
PROSITE profilePS5129419.966137193IPR017930Myb domain
SuperFamilySSF466891.22E-17138193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17140191IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-12141187IPR009057Homeodomain-like
SMARTSM007175.5E-13141191IPR001005SANT/Myb domain
PfamPF002491.3E-12144188IPR001005SANT/Myb domain
CDDcd001673.66E-11144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEMMIWGGME IPTPDSYLTC PNWSVDPPPP LHPNRPHWTL RENKIFEENL AVHDKETPDR  60
WHKIAKMLPG KSVEEVKRHY KNLEDDVSHI EAGLIPFPGY TSSSFTLDMV DSRAGLKQPF  120
GVSCGKRSAS SKSCGEQERK KGVPWTEEEH RLFLMGLKKY GKGDWRNISR NFVMTRTPTQ  180
VASHAQKYFL RLSSGGKDKR RSSIHDITTA NIPDNTTKLP SSPPPLQSSG SVPLNSTKSK  240
ESSPSANSAS GMIFDSYPNL QTTDFGNQQQ MVFHGLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19381131186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896949.14e-93transcription factor DIVARICATA
SwissprotQ8S9H74e-82DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9PNF40.0A0A0K9PNF4_ZOSMR; MYB transcription factor
STRINGGorai.009G093700.13e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]