PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma19g00820.1 | ||||||||
Common Name | ZOSMA_19G00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31101.1 Da PI: 9.0741 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.2e-10 | 35 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 r WT E +++ + + + ++ +W++Ia++++ g++ +++k ++ ++ Zosma19g00820.1 35 RPHWTLRENKIFEENLAVHDKEtpdRWHKIAKMLP-GKSVEEVKRHYKNL 83 668*****************99*************.***********997 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.7e-14 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Zosma19g00820.1 144 PWTEEEHRLFLMGLKKYGKGDWRNISRNFVMTRTPTQVASHAQKY 188 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.916 | 33 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-11 | 34 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-8 | 35 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 35 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.74E-12 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-9 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 19.966 | 137 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-17 | 138 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 140 | 191 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 141 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-13 | 141 | 191 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-12 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-11 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEMMIWGGME IPTPDSYLTC PNWSVDPPPP LHPNRPHWTL RENKIFEENL AVHDKETPDR 60 WHKIAKMLPG KSVEEVKRHY KNLEDDVSHI EAGLIPFPGY TSSSFTLDMV DSRAGLKQPF 120 GVSCGKRSAS SKSCGEQERK KGVPWTEEEH RLFLMGLKKY GKGDWRNISR NFVMTRTPTQ 180 VASHAQKYFL RLSSGGKDKR RSSIHDITTA NIPDNTTKLP SSPPPLQSSG SVPLNSTKSK 240 ESSPSANSAS GMIFDSYPNL QTTDFGNQQQ MVFHGLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-19 | 38 | 113 | 11 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015896949.1 | 4e-93 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 4e-82 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0K9PNF4 | 0.0 | A0A0K9PNF4_ZOSMR; MYB transcription factor | ||||
STRING | Gorai.009G093700.1 | 3e-89 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-86 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma19g00820.1 |
Publications ? help Back to Top | |||
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