PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma19g00510.1 | ||||||||
Common Name | ZOSMA_19G00510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GATA | ||||||||
Protein Properties | Length: 347aa MW: 38297.6 Da PI: 7.4615 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.2 | 6.2e-15 | 251 | 281 | 1 | 29 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGly 29 C++Cg t Tp++Rrgpdg++tLCnaCGl+ Zosma19g00510.1 251 CHHCGITAksTPMMRRGPDGPRTLCNACGLM 281 *****99889*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.0E-10 | 115 | 150 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.772 | 115 | 150 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.5E-12 | 120 | 149 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-16 | 176 | 218 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.612 | 176 | 218 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-5 | 245 | 311 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-9 | 249 | 289 | No hit | No description |
CDD | cd00202 | 8.24E-11 | 250 | 281 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-13 | 250 | 282 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.3E-12 | 251 | 281 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 251 | 278 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSENPTPPVD MEGLRGGGAG LYSSETQHHE HIQSVHPVMH LPSQIKDVHG ANNNSGLLVM 60 PHDGRLYGQE QEHGVIHGGA GVVEGLEEDH DGAVDSEGME GEVPQDASNL GIMVAPGMGN 120 QLTLSFQGEV YVFDSVSPEK VQAVLLLLGG REMNPGAATV PSSTQQNNRR SNYPQRVASL 180 MRFREKRKER NFDKKIRYSV RKEVAQRMQR NKGQFTSSKS KTEDSTMGIA NWDATQNWSA 240 EDNQPQAASV CHHCGITAKS TPMMRRGPDG PRTLCNACGL MELLGISRRL AWFIFKVPWV 300 CQILGMKTAM KHLLLINHLW STQTVMILHH RSICTFPLLT LMISIE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811434.1 | 1e-112 | GATA transcription factor 20-like | ||||
Swissprot | Q5Z4U5 | 5e-82 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0K9PNC1 | 0.0 | A0A0K9PNC1_ZOSMR; GATA transcription factor 25 | ||||
STRING | XP_008811434.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-77 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma19g00510.1 |