PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00380.1
Common NameZOSMA_19G00380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 264aa    MW: 30242.9 Da    PI: 8.3673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.1e-131663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l   + ++G  +W+ +++  g+ R++k+c++rw +yl
  Zosma19g00380.1 16 KGSWTIEEDRKLTGIFLKYGQCRWSDVPKLAGLWRCPKSCRLRWINYL 63
                     799*******************************************97 PP
2Myb_DNA-binding39.51.3e-1269113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++ E+   + ++ +lG++ W+ Ia++++ gRt++++k+ w++ 
  Zosma19g00380.1  69 RGPLSESEERVVISLHSKLGNK-WSQIASHLP-GRTDNEIKNIWNTT 113
                      78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.8491463IPR017877Myb-like domain
SuperFamilySSF466896.64E-2714110IPR009057Homeodomain-like
SMARTSM007173.8E-91565IPR001005SANT/Myb domain
PfamPF002495.5E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-181770IPR009057Homeodomain-like
CDDcd001672.57E-61863No hitNo description
PROSITE profilePS5129424.11964118IPR017930Myb domain
SMARTSM007171.1E-1168116IPR001005SANT/Myb domain
PfamPF002492.5E-1169113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2471119IPR009057Homeodomain-like
CDDcd001677.24E-873114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRKPCCKNK FGMMKKGSWT IEEDRKLTGI FLKYGQCRWS DVPKLAGLWR CPKSCRLRWI  60
NYLRPDVKRG PLSESEERVV ISLHSKLGNK WSQIASHLPG RTDNEIKNIW NTTLRKKLIR  120
KEIDYQAQKS FSISFCSSDK KKDEFADHQS EGNSQSWVTS SVHTNSSRSS SGGDSGLSHE  180
FQMEFPGLDF DDHRVVNHVL PTSKRSDDDQ EILKSSPNQS NSSEYDKVDR NSPESSQYLS  240
NVDIDWDSFI DELDQLIPKF SLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-291411825128MYB TRANSFORMING PROTEIN
1mse_C4e-29131181105C-Myb DNA-Binding Domain
1msf_C4e-29131181105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417417.18e-55PREDICTED: protein ODORANT1
SwissprotQ9C7U75e-54MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0K9PNA20.0A0A0K9PNA2_ZOSMR; Myb domain protein 4
STRINGAES992364e-54(Medicago truncatula)
STRINGXP_010268020.14e-54(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-56myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]